Escherichia coli LY180: LY180_19810
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Entry
LY180_19810 CDS
T02846
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ecol
Escherichia coli LY180
Pathway
ecol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LY180_19810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecol03019
]
LY180_19810
03400 DNA repair and recombination proteins [BR:
ecol03400
]
LY180_19810
Enzymes [BR:
ecol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LY180_19810
Messenger RNA biogenesis [BR:
ecol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LY180_19810
DNA repair and recombination proteins [BR:
ecol03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LY180_19810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-GeneID:
16981629
NCBI-ProteinID:
AGW10865
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All DBs
Position
4148603..4150438
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AA seq
611 aa
AA seq
DB search
MNVAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQ
IPALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRL
LYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFM
ALTATADDTTRQDIVRLLGLNDPLIQINSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKS
GIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM
GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQG
QLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGSTDAQI
ALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIH
LGLVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAK
LRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMAL
IRAHVDGDDEE
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
gtgaatgtggcgcaggcggaagtgttgaatctggagtccggagctaaacaggttttacaa
gaaacctttggctaccaacagtttcgccccggccaggaagaaattatcgacactgtgctt
tccggtcgcgattgcctggtcgtcatgcccaccggtggcggaaaatccctttgctatcaa
attcctgccttattgctaaacggccttaccgtggttgtttcaccgctgatttcgttgatg
aaagatcaggtggatcaactgcaagccaacggcgtggcggcggcgtgccttaactcgacg
caaacccgcgaacagcaacttgaagtgatgacaggctgccgcaccgggcaaattcgtctg
ctttatatcgccccggaacgcctgatgctggataactttcttgagcatctggcgcactgg
aatccggtgttattagccgttgatgaagcgcactgtatctcccaatggggccacgatttc
cgcccggaatatgccgcgctcggtcagttgcgccagcggttcccgacgctgccgtttatg
gcgctgaccgccacagccgacgacaccacgcgccaggatatcgtgcgcctgctggggctg
aacgatccgctgattcaaatcaacagttttgaccgtccgaatattcgctacatgctgatg
gagaagttcaaaccgctcgatcagttgatgcgctacgtgcaggaacagcgcggtaagtcc
ggcattatctactgcaacagccgggcgaaagtagaagacaccgctgcgcgcctgcaaagc
aagggtattagcgcggcggcctatcatgccgggctggaaaataatgtccgcgccgacgtg
caggagaaattccagcgcgatgacctgcaaattgtggtggcgacggtggcgttcggcatg
ggcatcaataaaccaaacgttcgcttcgtggtccactttgatattccgcgcaatatcgaa
tcctattatcaggaaaccggtcgcgccgggcgtgatggcctgcccgcggaagcgatgctg
ttttacgatccggccgatatggcgtggctgcgccgttgtctggaagagaagccgcagggg
cagttgcaggatatcgaacgtcataaactcaatgcgatgggcgcttttgccgaagcgcaa
acttgccgtcgtctggtactgctgaactattttggcgaagggcgtcaggagccgtgcggg
aactgcgatatctgcctcgatccgccgaaacagtacgacggttcaaccgatgctcagatt
gccctttccaccattggtcgtgtgaatcagcgttttggtatgggctatgtggtggaagtg
attcgcggcgctaataaccagcgtatccgcgactatggtcatgacaaactaaaagtctac
ggtatgggccgtgataaaagtcatgaacattgggtgagcgtgatccgccagttgattcac
ctcggcctggtgacgcaaaatattgcccagcattctgccctccaactgacagaggccgcg
cgtccggtgctgcgcggcgaatcctctttgcaacttgccgtgccgcgtatcgtggcgctc
aaaccgaaagcgatgcagaaatcgttcggcggcaactatgatcgcaaactgttcgccaaa
ttacgcaaactgcgtaaatcgattgccgatgaaagtaatgtcccgccgtacgtggtgttt
aacgacgcaaccttgattgagatggctgaacagatgccgatcaccgccagcgaaatgctc
agcgttaacggcgttgggatgcgcaagctggaacgctttggcaaaccgtttatggcgctg
attcgtgcgcatgttgatggcgatgacgaagagtag
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