Candidatus Electrothrix communis: QTN59_08130
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Entry
QTN59_08130 CDS
T09821
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
ecom
Candidatus Electrothrix communis
Pathway
ecom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QTN59_08130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecom03019
]
QTN59_08130
Enzymes [BR:
ecom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QTN59_08130
Messenger RNA biogenesis [BR:
ecom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QTN59_08130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Utp25_C
ERCC3_RAD25_C
AAA_19
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
WLE98795
LinkDB
All DBs
Position
complement(1878903..1880486)
Genome browser
AA seq
527 aa
AA seq
DB search
MIKRFLIKAGRKLKRLSGSGEKKKKTTSLPEQEPLHSTELQHTSSEKTVKTVQPAAAEQQ
RGAKGAAEGTAQNRLPRNPRRKKPRWTLEQFSVDPVEGKSRFHDFSLSLGLMHAIADLDF
KYCTPIQEKALPDAMAGKDIIARAGTGTGKSAVFLVAVFARLINENKRHRQAEEKSPLRK
PGFPRALIIAPTRELVMQIAKDGQALAKYAPLRVVAVYGGTDYQKQERVLAERPVDVLVA
TPGRLLDYVSKRVLNLQQAGIMVIDEADRMLDMGFIPDVRRIIYKMPPKEKRQTMLFSAT
LTEDVKHLASQWCVKPISIESKPEQVAIDTVRQVVYTVTSDEKYHVLYNLIKTQEHERIM
VFTNMKIEAARLNDRLQRNGINAILLTGDVPQKKRQTRLESFRGGDAAVMIATDVAGRGI
HIDGISHVVNYTLPYEPEDYVHRIGRTGRAGKSGIAISFACEEGAFQLPDIEEYIGKSMT
CVLPEAELLVKPPKGENKGRNKGSEKSPRNPRSPRNDGGRRHQTRRR
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgattaaacgattccttattaaggccggacgaaaattgaaacggctgtctggatcgggt
gagaaaaagaaaaaaacgacctctttgcccgaacaagagccgttgcactcgacagaactg
cagcacacatcttccgaaaaaactgttaaaacggttcagcccgcagctgcggaacagcaa
agaggtgcaaagggagcagcagagggaacagcgcagaaccgactgcctcgaaatccgaga
aggaagaagccgcgctggactttggagcagttctcggttgatccggtggagggcaagagc
cgttttcatgatttttctttgtcgttgggcctgatgcatgctattgccgatcttgatttt
aaatactgcacccccattcaggaaaaggccctgcctgacgctatggccgggaaggatatc
attgccagagctgggaccgggactggcaaaagcgcggtttttctggttgcggtctttgcc
cgtctgatcaatgagaataagcggcaccggcaggccgaagagaaatcacctctacgtaag
cccggatttccccgggctttgattattgctccgaccagggaactggtcatgcagattgcc
aaagacggtcaggctttggccaagtatgctccgctgcgcgttgtggctgtctacggcggg
accgattaccagaaacaggagcgggtcctggcagaacgtcctgttgatgtccttgttgcg
acgccgggtcgtctgctggattacgtttctaagagggtgctcaatctccagcaggctgga
atcatggtcattgatgaggcggatcggatgttggacatgggctttatcccggatgttcgg
cggattatctataaaatgcctcccaaggaaaaacgccagactatgcttttttccgcaacg
ctgaccgaggatgtcaagcatctggcttcgcaatggtgtgttaagccgatatctattgag
agcaagccggagcaggtggctattgatacggtacgccaggtggtctataccgtgaccagt
gatgagaaataccatgtgctctacaacctgatcaagacgcaggagcatgagcggatcatg
gtttttaccaatatgaaaatcgaagctgcccgcctcaatgatcggttgcagcgtaacggg
atcaatgctattctgttaaccggtgatgttccccagaaaaaacgtcagaccagactggaa
agctttcgaggcggagatgctgccgtaatgattgcgacagacgtggccgggcgcggaatt
catattgacggtatcagtcatgtggtgaattacaccttgccctatgagccggaagattat
gttcaccggatcggcaggacaggcagagccgggaagagcggtatcgccatcagctttgcc
tgtgaagaaggggcatttcagcttcctgacattgaagagtacatcgggaaatcaatgacc
tgtgtgttgccggaggcggagctattggttaagccgcctaaaggggaaaataaaggaaga
aataaagggagcgagaaaagcccccgcaacccccgcagtccccgtaatgatggcggaaga
aggcatcagacaagaaggcggtaa
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