Candidatus Electrothrix communis: QTN59_11235
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Entry
QTN59_11235 CDS
T09821
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ecom
Candidatus Electrothrix communis
Pathway
ecom03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ecom00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QTN59_11235 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecom03021
]
QTN59_11235 (rpoC)
03400 DNA repair and recombination proteins [BR:
ecom03400
]
QTN59_11235 (rpoC)
Enzymes [BR:
ecom01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QTN59_11235 (rpoC)
Transcription machinery [BR:
ecom03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QTN59_11235 (rpoC)
DNA repair and recombination proteins [BR:
ecom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QTN59_11235 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WLE95259
LinkDB
All DBs
Position
complement(2543265..2547320)
Genome browser
AA seq
1351 aa
AA seq
DB search
MEELFSFFNKPKGPLVFDKVKISLASPTKILEWSHGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECNCGKYKRMKHRGVVCEKCGVEVIQSKVRRERLGHIKLAAPVAHIWFLKSL
PTKIGSILDMTLKEMERILYFESYAVVRSEVESIPPGTLLNEEQYQEAMEQFPGSFEVGI
GAEAIRDMLKDLDLVELSTQLRREMKETGSVTKRTKLGKRLNVTEAFRDSGNRPEWMILE
VVPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLELDAPDIIIRNEKRMLQ
EAVDVLFDNGRRGRTITGPNKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPH
LRLHQCGLPKKMAQELFKPFIYNKLETLGYVTTIKSARKMVEKGAKEVWDVLDDIVREYP
VILNRAPTLHRLGMQAFEVVLIEGKAIQLHPLVCSAFNADFDGDQMAVHLPLSVEAQVEA
RVLMMSTNNILSPASGSPVIIPSQDIVLGLYYMTRERYAVAGEGMTFSGPAEARMAYDHG
AAHLQARVKLRLNGELVATTIGRILVGELLPKTVPFAVVNKELSKKELGFLVDYTYRHAG
TKDTVILADRLKDLGYEQATQAGISICINDMKIPVNKEEFVEESERKAAEVDEQYSDGLI
TDGEKYNKIVDIWSKATDKITQEMMEEMSVDYVPDGQGNVLDLKSFNSVYIMADSGARGS
KDQIRQLAGMRGLMAKPSGAIIETPIKANFREGLSVLEYFISTHGARKGLADTALKTANS
GYLTRRLVDVAQDSTIVEKDCSTMRYTVAEPLLDGGEVIVRIGERILGRVASDDILDPQS
GEVIVEMDDEITEEKVEAIEAAAIDRVRIRSVLTCESRRGVCAKCYGRDLGRGHMVNIGE
AVGIIAAQSIGEPGTQLTMRTFHIGGTASRSVEQAEIRSQRTGIVRYKGLHSVTNSIGFE
VVMNRNAEITVVDDQDVNRERFSVPYGAEVRVADGARVEPGTVIADWDAFAIPIVAEAPG
RIKYGDIIEGDTMQERVDQVTGKVSRVIIHATTAKHSSPRISLKDGRGRTIKLPELQHEA
RYPLPVGSIISVDEGAEVTAGTVVAKIPRETTKTKDITGGLPRVAELFEVRKPKEQAIVT
EIDGRVGFGKELKGKRRVVVTPETGEQREYLVPKAKHVTVHEGDYVKAGDALMDGSILPN
DILRIKGEEELAQFLVDEIQEVYRLQGVKINDKHIETIVRQMLKRVKITDPGDTKFMLDQ
LTEKWMFYDENKRVMDEGMQPASAEPQLLGVTKASLSTDSFISAASFQETTKVLTNAAMA
GRVDTLDGLKENVIMGRLISAGTGLSRYKIK
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
gtggaagaactgttcagcttttttaacaagccgaaagggccgcttgtttttgacaaggtt
aaaatttcccttgcatcaccgacaaagatacttgagtggtcccacggtgaagtaaaaaaa
cccgagaccattaattaccgtaccttcaagccggagcgggacggattattctgcgcaaag
atattcgggcctgttaaggactacgagtgtaattgcgggaagtataaacgcatgaagcac
agaggtgtggtctgtgaaaaatgcggtgttgaggttattcagtcaaaggttcggcgagag
cgcctcggccatattaaattagccgctcctgttgcccatatctggtttctcaagtcattg
cccacgaagattgggtcaatactggatatgacgctcaaggagatggaacggatactgtac
tttgagtcctatgctgttgttcgctccgaggtggagagcatcccgccaggaaccttgctg
aatgaggagcaatatcaggaggcgatggagcaattcccagggtcttttgaagtcgggatt
ggtgccgaagcaattcgcgatatgctgaaggacctggatcttgttgaactgtcaacacag
ttgcgcagggagatgaaggaaaccggttctgttaccaaacggacgaagcttggtaagcgc
ttgaatgttactgaagcctttcgtgattccggtaaccgtcctgaatggatgatcctggag
gttgtccctgttttgcctccggacctgcgccccctggtgccgttggaaggcggtcgtttt
gcaacctctgatttgaacgatttgtaccgtcgggtcattaatcgcaataaccgtctgaag
cgtttgttggagttggatgccccggatatcattatccggaacgaaaaacggatgctgcag
gaagcggttgacgttctttttgataatggacggcgaggccgtaccattaccggaccaaat
aaacgtccgctcaagtcgttgtctgacatgctcaaaggaaagcaggggcgttttcgccag
aacctgttgggtaagcgtgttgactactccggtcgttctgttatcgtggttggtcctcat
ctgcgtctgcatcaatgtggtctgcccaagaaaatggctcaggagctgttcaagcctttt
atttataataagcttgagaccttaggctatgtgacaaccatcaagagtgcccgtaagatg
gtggaaaagggcgcgaaagaagtatgggatgtccttgatgacattgttcgcgaataccct
gttattctgaaccgcgcaccgactctgcataggctcggtatgcaggcctttgaggttgtt
ctcatagagggtaaggctattcagctgcatcccttggtctgctctgcttttaacgccgac
tttgacggcgatcagatggcagtccatctccccttgtcggtggaagcccaggttgaggcc
agggttctgatgatgtccaccaataatattctgtctccggctagcggtagtccggtcatt
ataccaagccaggatatagtcctcggtttgtattatatgaccagagagcgctatgccgtt
gccggtgaaggcatgactttcagcggtcctgctgaggctcggatggcctatgaccatggt
gcggcccatcttcaggcccgggttaagctgcgcctgaacggtgaattggttgcaacaaca
attggaagaattctcgttggtgagcttctgccgaaaactgttccttttgctgtggtcaat
aaagagctttctaagaaagagctgggctttctggtggattacacctaccgacatgcagga
acaaaggatacagttattcttgcagatcgtctgaaagacctggggtatgagcaggccacc
caggcgggaatttctatctgcattaatgacatgaagattccggtcaacaaggaagaattt
gttgaagagtctgagcgtaaggcggcggaagttgatgagcagtattcggacggtctgatc
actgatggtgagaagtataataagatcgttgatatctggtcaaaagccactgataagatc
acccaggaaatgatggaagagatgtctgtggattacgtcccagacggccaggggaatgta
ctggacttgaagagcttcaactcagtctatatcatggccgactccggtgctcgtggttca
aaggatcagatcaggcagctggccggtatgcgcggcttgatggcgaaaccttccggtgct
attattgaaacgccgattaaggcgaatttccgtgaaggtctgtccgttcttgagtatttt
atttccacccatggtgctcggaaaggtcttgcggatacagctctgaagacagccaactcc
ggttatctgaccagacgattagttgacgttgcccaggattcaacgattgtcgagaaggat
tgtagcacaatgcgctacacggttgccgagcctctgttagatggtggcgaagttattgtt
cgcattggtgagcggattcttggtcgagtggcaagtgatgatattcttgacccccaatct
ggtgaagtcatcgttgagatggatgatgaaatcacagaggaaaaggttgaagccattgaa
gctgctgctattgacagggtacgaattcgttcggtactgacctgtgaatcacggcgtggt
gtttgtgccaagtgctatggtcgagacctgggacgcggtcatatggtgaatatcggtgaa
gcggttggcattatcgctgctcagtccattggtgagccgggtactcagctgaccatgcgt
acctttcatattggtggtacggcgagtcgatccgttgaacaggctgaaattcgcagccag
cgcaccggtattgtgcgctacaagggattacattcggtaaccaattctattgggttcgag
gtggttatgaaccgtaatgcggaaattaccgttgttgacgaccaggatgtgaacagagag
cgtttttctgttccttacggtgcggaagtacgggttgctgacggcgcacgggttgagcct
gggactgtgattgctgattgggatgcctttgctattcctattgttgccgaggcaccgggt
cggatcaagtacggcgatataattgagggtgataccatgcaggagcgtgtggatcaggtg
accggaaaggtctccagggttattattcacgccacaactgctaagcactccagcccgcga
atttctttgaaggatggccgtggtcgtaccattaagctgcctgagcttcagcacgaggcc
cgttatccgttgccggttggctcaattatctcggtggatgagggggcagaggtcacagca
ggtaccgtggtggcaaagattccgcgtgaaaccacgaagaccaaggatattacaggtggt
ctgccacgagtcgcagagctctttgaggtgcgtaaacccaaggagcaggccattgttacg
gaaattgacggtcgagttggctttggtaaagaactcaaagggaagcgacgggttgtcgta
accccggaaaccggtgagcagagagagtatctggttccgaaagcaaagcatgttacggtt
catgaaggcgattatgtaaaggccggtgatgcgttgatggatggatccattcttcctaac
gacatcctacggatcaaaggtgaggaagagctggcgcaattccttgttgatgagatccag
gaagtttatcgtcttcaaggcgttaaaatcaatgacaagcatattgaaactattgttcgc
cagatgttgaagagggtcaagattaccgaccccggcgacaccaagtttatgcttgatcag
ctcacggaaaaatggatgttttacgatgagaataaacgggtaatggatgagggcatgcag
cctgcctctgctgagccccagttattaggggtaacaaaggcatcattatccacagactca
tttatttcagcggcttccttccaggaaacaaccaaggtcttgaccaatgcggcaatggcc
ggaagagttgatactctggacggtttaaaggaaaatgttatcatgggtcgcttgatttca
gctggaactggcttgtcgagatacaagattaaatga
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integrated database retrieval system
