Candidatus Electrothrix communis: QTN59_16400
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Entry
QTN59_16400 CDS
T09821
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
ecom
Candidatus Electrothrix communis
Pathway
ecom02020
Two-component system
ecom02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ecom00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
QTN59_16400 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
QTN59_16400 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecom03021
]
QTN59_16400 (rpoN)
Transcription machinery [BR:
ecom03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
QTN59_16400 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_26
VHL_C
CENP-B_N
HTH_21
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
WLE96254
LinkDB
All DBs
Position
3709127..3710581
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AA seq
484 aa
AA seq
DB search
MSLELRQQVKLTQKLVMTQQLRQAIKLLQLNRLELTNALHEELAQNPMLEEVVAVQENIS
NPDSLSAEEVPGAAAESVATSQVSGDDPKTVAEVDWEDYSNNFDSDFSFAKEVPPADAPS
QFDFISAAPGLLSFLEWQLSHIKLDETDQDLAIFILGNLNGHGLFEASIEDICDYAGCSH
EEAEGMLRLVQSLDPPGVAARDLRESLLLQLERKGMEEDLAYMLVAEHLDELQTHNFTKI
AAKIDYTAREVRNAFAVITSLTPYPGNEYSNEQTNYVIPDVYLYQLDGEFIIQLNNDGMP
LLQLSTEYKDIIKNKSKKGGDPKGYLTEQKRHAQNFINSVHYRQNSIYKVMRSLLKFQHD
FFEKGPGYLKPLVLNDVAQDIGLHESTVSRITSNKYVHTPQGLYELKYFFSSAVSTTDGN
LVASEAIKNRIRLLIQQEAPEKPLSDNSISELLKEEGVKVARRTVAKYRDQLKILPVKHR
RKSR
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgagtcttgaactccgacagcaagtaaaacttacccaaaaattagttatgacgcagcag
ttgcgtcaggctattaaacttctgcagctgaatcgcttggaactgaccaatgcgctgcac
gaagaactggcacagaaccctatgttggaggaggttgttgctgttcaggaaaatatcagt
aatcctgattcgttatctgccgaagaggttccgggggctgctgctgagtcggtagccact
tcccaggtttctggagatgatccgaaaaccgtggccgaggttgactgggaagattactcc
aataattttgattctgatttctcctttgccaaggaagttccgcctgccgacgctccgtcg
cagtttgattttatctcagccgctcccggcctactttcctttctggaatggcagctttcc
catattaaacttgacgaaacagaccaggatctggccatctttatcctcggcaacctgaac
gggcatggattatttgaagcatctatcgaggatatctgtgactatgcagggtgcagtcat
gaagaagccgaagggatgctgcggttggtgcaaagtcttgatccgccaggagtagctgcg
cgtgacctccgcgaatccttgttgctccagctggagcggaaggggatggaagaggacttg
gcctatatgctggttgctgagcatcttgatgagttacagacccataatttcaccaagatt
gccgcgaaaattgactacactgcccgtgaagtccgtaatgctttcgctgtaattacctca
ttaacgccatatcctggtaatgaatacagtaacgaacagaccaactatgtcattcctgat
gtatatctgtaccaactggatggtgaatttattattcagctcaacaacgacggaatgccc
ctgttgcagctttccacagagtacaaagatattataaagaataagagcaagaagggtgga
gaccccaagggatacttgactgaacagaagcggcatgcgcaaaatttcattaactcagtc
cattatcggcagaattcgatctacaaggtcatgaggagtttgctgaagtttcaacatgat
ttttttgaaaaagggccgggttacctgaagccgcttgtgcttaatgatgtggcacaggat
atcggactccatgagtccacagttagccggattacgtcaaataaatatgtccatacccca
caggggctttatgagctaaagtattttttttccagtgcggtctcgactactgacgggaat
ctggtggcctctgaagcgataaaaaatcgtatcagactgcttattcagcaggaggctccg
gaaaaaccgctcagtgataatagtatttctgaacttttaaaagaagagggagtaaaagtt
gcccggagaacagtggcaaaatacagggatcaactgaaaatcctcccggttaagcatcgt
cgtaagagccgttag
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integrated database retrieval system
