Candidatus Electrothrix communis: QTN59_20295
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Entry
QTN59_20295 CDS
T09821
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ecom
Candidatus Electrothrix communis
Pathway
ecom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QTN59_20295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecom03019
]
QTN59_20295
03009 Ribosome biogenesis [BR:
ecom03009
]
QTN59_20295
Enzymes [BR:
ecom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QTN59_20295
Messenger RNA biogenesis [BR:
ecom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QTN59_20295
Ribosome biogenesis [BR:
ecom03009
]
Prokaryotic type
rRNA helicases
QTN59_20295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
WLE97002
LinkDB
All DBs
Position
complement(4610858..4612567)
Genome browser
AA seq
569 aa
AA seq
DB search
MTTFTDLGLNDELLQALDALGFKEPTPVQVKVIPLMLEQEIDIVSLAQTGTGKTAAFGLP
LIHLIDAKDKRTQGLILCPTRELCMQVSRDLESFSRFTQGIKVLAIYGGASIEQQMRELR
KGVQIIVATPGRLRDLIRRGKVDISGVRYAVFDEADEMLQMGFQDELNAILAETPKEKNT
LLFSATMSREVANIASRYMTNPVEITMGKKNAGAETVTHEYYLINGRDRYPALKRIVDNN
PDNFSIIFCRTRRDTQEVADKLIQDGYRADSLHGELSQAQRDLVMDKFRKKHLQLLVATD
VAARGLDVNDLTHVINYSLPDDIAGYTHRSGRTGRAGSNGTSIALVDMRERHRIRHIEQK
INKKFKKAQIPTGKEICTKQLHSLMEVISNTEVDHEQIDPLYADIEQQLAHLDREQLIKK
FISLEFNRFLKYYKNAPDLNQQVSGKDRPSSFQKNTRNTQGNNNFTRVHLNVGRRNGILP
ENLISTINAAPGGGRIKVGKIEIMRNTATIEGDSRFISQILGAFQHFKVNGKAVTAKVVQ
APPTGGGSGRRYGNAGSSRKPWKGRSPRK
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgaccacatttacagacctcggcctgaatgatgaactccttcaggctcttgacgcccta
ggattcaaagaaccaaccccggtacaggtcaaggttatcccgctgatgctggagcaagag
atcgatatcgtcagcctggcccagaccggaaccggcaaaaccgcagcctttggtttgccg
ttgatccatctgatcgacgccaaggataaacgaacccaaggcctgatcctctgcccgacc
cgggaactctgtatgcaggtgtcgagagatcttgagagcttttctcgtttcactcaagga
ataaaagtattggcgatctacggcggagcgagcattgagcagcagatgcgcgagctccgg
aaaggtgtgcagattattgttgccacaccgggacgcctgcgcgacctgattcgacggggc
aaggtagatatctccggtgtccgctatgcagtctttgacgaggccgatgaaatgctgcaa
atgggtttccaggatgaactcaacgctatcctcgccgaaaccccgaaagaaaaaaacact
ctgttgttttcagccaccatgtccagggaggttgccaatatcgcgagccgatatatgacc
aatcccgtggaaatcaccatgggaaaaaagaatgccggtgctgaaactgtcacccatgaa
tattacctgatcaacggcagggatcgctatcccgccttaaaacggattgtagataataac
ccggacaacttctccattattttctgccgaaccagaagagatacccaggaagtggcggac
aagctgattcaggacggctaccgggccgattccctgcacggagaattgagccaggctcag
cgggatctggttatggataaattccgtaaaaaacacctgcaattgttagtggccactgat
gtcgcggcccgtggcctggatgtcaacgacctgacccatgttatcaactacagcctgcct
gatgatattgctggctatacccatcgcagcgggcgtaccgggcgggccgggagcaacggc
acctccatcgctctggttgacatgcgagaacgccatcggatcagacatattgagcagaag
atcaataaaaaattcaaaaaggcccagatccctacgggtaaagagatctgcaccaagcag
ctgcacagcctgatggaggttatcagcaataccgaggtggatcatgagcagattgatccc
ctgtacgcggatattgagcagcaacttgcgcatttggatcgagagcaactgatcaaaaaa
tttatatccctggagttcaatcgattcctgaaatattataaaaatgcccctgatcttaac
caacaggtcagcggcaaagatcgaccaagcagttttcaaaagaatacaagaaatacgcag
ggaaacaataatttcactcgcgttcacctcaatgtcggacggcgcaacggtattttgccg
gaaaacctgatcagcacgatcaatgccgctccgggcggcggtcgcatcaaggtgggcaag
atagaaatcatgcgcaacacagcgaccatcgagggggacagccgcttcatctcgcagata
ttaggtgcctttcagcatttcaaagttaacggcaaagctgtaaccgcaaaggtcgtccaa
gcacctcctaccggtggtggcagcggacgacgatacggtaacgcgggcagctcacgcaaa
ccttggaaaggcagaagcccaaggaaataa
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