Escherichia coli O145 H28 RM13514 (EHEC): ECRM13514_3597
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Entry
ECRM13514_3597 CDS
T03010
Symbol
truD
Name
(GenBank) tRNA pseudouridine 13 synthase
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
ecoo
Escherichia coli O145:H28 RM13514 (EHEC)
Brite
KEGG Orthology (KO) [BR:
ecoo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ecoo03016
]
ECRM13514_3597 (truD)
Enzymes [BR:
ecoo01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
ECRM13514_3597 (truD)
Transfer RNA biogenesis [BR:
ecoo03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
ECRM13514_3597 (truD)
Prokaryotic type
ECRM13514_3597 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
AHG10256
LinkDB
All DBs
Position
complement(3490849..3491898)
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AA seq
349 aa
AA seq
DB search
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVAD
ALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRK
LRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQ
TNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEE
LAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRA
MLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgattgagtttgataatctcacttacctccacggtaaaccgcaaggcaccgggctgctg
aaagccaatccggaagactttgtggtggtggaagatttgggctttgagcctgatggtgaa
ggtgagcatattctggttagaatcctcaaaaacggctgcaatacccgttttgtggcggat
gcactggcgaaattcctgaaaattcatgcccgtgaagtcagctttgctgggcaaaaagac
aaacatgctgttacagaacagtggttatgcgctcgcgtgccgggcaaggaaatgcccgat
ctgagcgcctttcaactggaaggctgccaggtgctggagtatgcgcggcacaagcgcaag
ctgcgtttaggggcgctgaaaggaaacgcctttaccctggttctgcgcgaagtgagcaat
cgcgatgacgttgaacaacgtctgatcgatatttgcgtaaaaggtgtaccgaactacttc
ggtgcccaacgttttgggattggcggtagcaacttgcagggcgcgctgcgctgggcgcaa
accaatactccggtgcgcgatcgcaataaacggagtttttggttgtcggcagcccgcagt
gcgttgtttaatcagattgttgctgagcgcctcaaaaaagcagacgttaatcaagttgtt
gacggcgatgcgctacaattagccggacgtggtagctggtttgtagcaaccaccgaagaa
ctggcggaattacagcgtcgcgtcaacgataaagagctgatgataaccgccgcattgccg
ggcagtggcgaatggggaactcagcgtgaagcgttggcattcgaacaagcagcggtcgcc
gcagaaactgaattacaagctttactggtgcgcgaaaaagttgaagccgcgcgcagagcg
atgctgctgtatccgcaacaattaagctggaattggtgggatgacgtcaccgtagagatc
cgtttctggcttccggcgggtagttttgcaaccagcgttgtcagggaacttatcaacaca
acaggtgattatgcgcatattgctgagtaa
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