KEGG   Ectopseudomonas composti: L0Y47_10550
Entry
L0Y47_10550       CDS       T11864                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
ecop  Ectopseudomonas composti
Pathway
ecop02020  Two-component system
Brite
KEGG Orthology (KO) [BR:ecop00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    L0Y47_10550
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ecop03021]
    L0Y47_10550
Transcription machinery [BR:ecop03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     L0Y47_10550
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 HTH_23 Sigma70_ECF Rv2175c_wHTH MerR HTH_24 HTH_29 Sigma70_r3 HTH_IclR PhyR_sigma-like HTH_31 HTH_17 TnsD HTH_AsnC-type HTH_5 HTH_3 MerR_1 HTH_10 DUF3080 HTH_11 FaeA Fe_dep_repress HTH_38 Phage_terminase GerE
Other DBs
NCBI-ProteinID: YCH84560
LinkDB
Position
complement(2338967..2339485)
AA seq 172 aa
MSVQDSSNQQLVGLLYRDHRDWLFGWLRKSLNCAQRAEDLSQDTFVRLLGRADLHSPREP
RALLTTIAKGLLVDQFRRHALERAYLEELALAPEAVQPSPEEQALALEQLAEIDRLLGQL
SSKARAAFLYNRLDGLGHAEIAERLGVSPSRVRQYLAQGLRQCYIALYGAPQ
NT seq 519 nt   +upstreamnt  +downstreamnt
gtgtcggttcaggattccagcaatcagcagttggtcggcctgctttaccgcgaccaccgt
gactggctgttcggctggctgcgtaaaagcctgaactgcgcgcagcgcgccgaagacctg
agtcaggacaccttcgtccgcctgctcggccgcgctgacctgcacagcccacgcgaaccc
agggccctgctcaccaccatcgccaaggggctgctggtcgaccagtttcgccgccatgcg
ctggaacgtgcctatctggaagaactcgcgctggctcctgaagccgtgcaaccgagcccg
gaagaacaggccctggccctggagcaactggccgagattgatcgcctgctcggtcagctg
tcgagcaaggcacgcgcagctttcctctataaccgtctggatggcctcggccatgccgag
atcgccgagcgccttggcgtgtccccgtcgcgcgtgcgtcaatacctcgctcagggcctg
cgccagtgctacatcgcactgtacggagcgccgcaatga

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