Ectopseudomonas composti: L0Y47_22255
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Entry
L0Y47_22255 CDS
T11864
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ecop Ectopseudomonas composti
Pathway
ecop03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ecop00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L0Y47_22255 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecop03021
]
L0Y47_22255 (rpoA)
03400 DNA repair and recombination proteins [BR:
ecop03400
]
L0Y47_22255 (rpoA)
Enzymes [BR:
ecop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L0Y47_22255 (rpoA)
Transcription machinery [BR:
ecop03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L0Y47_22255 (rpoA)
DNA repair and recombination proteins [BR:
ecop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L0Y47_22255 (rpoA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
HHH_XRCC3_RpoA
AMIN-like
Motif
Other DBs
NCBI-ProteinID:
YCH81884
LinkDB
All DBs
Position
complement(4816184..4817185)
Genome browser
AA seq
333 aa
AA seq
DB search
MQISVNEFLTPRHIDVQEVSSTRAKITLEPLERGFGHTLGNALRRILLSSMPGCAVVEAE
IDGVLHEYSAIEGVQEDVIEILLNLKGLAIKLHGRDEVTLTLAKKGPGVVTAADIQLDHD
VEIVNGDHVIANLAANGALNMKLTVARGRGYEPADARQSDEDESRSIGRLQLDASFSPVR
RVAYVVENARVEQRTNLDKLVIDLETNGTLDPEEAIRRAATILQQQLAAFVDLKGDSEPV
VVEQEDEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLDNWPPASLKKDDKATA
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgcagatttcggtaaatgagttcctgaccccccgtcacattgatgtgcaggaggtcagt
tcgacccgcgccaagatcaccctcgagcctctcgagcgtggctttggccataccctgggc
aacgcgctgcgtcgcatcctgttgtcctccatgcctggctgtgcagtagtcgaggccgag
atcgatggcgtactccatgagtactccgcgatcgaaggtgtgcaggaagatgtaatcgag
atcctgctcaacctgaaaggtctggctatcaagctgcacggccgtgacgaagtgaccctg
actctggctaaaaagggcccgggcgtagttaccgctgccgatattcagctggatcacgat
gtcgaaatcgtcaatggcgaccacgtaatcgccaacctggccgccaatggtgcgctgaac
atgaagctcaccgtagctcgtggtcgcggctatgagccggctgacgcgcgtcagagcgac
gaagatgaaagccgcagcattggtcgcttgcagctggatgcttcgttcagccctgtgcgt
cgggttgcttacgtggtggaaaacgcccgtgtcgagcagcgtaccaacctggacaaactg
gttatcgacctggaaaccaacggtaccctggatcctgaagaggccatccgtcgtgccgcg
accatcctgcaacagcagttggccgcgttcgtcgacctcaaaggtgacagtgagccggtg
gtggtcgagcaggaagacgagatcgatccgatcctgctgcgtcctgtcgatgacctggaa
ctgaccgtacgttcggccaactgcctcaaggcagagaacatctactacattggtgacctg
attcagcgcaccgaagtagagctgctcaaaaccccgaacctgggcaagaaatccctgacc
gaaatcaaggatgttctggcttctcgcggtctgtccctcggtatgcgcctcgacaactgg
ccgccggcaagtctgaagaaagacgataaggctactgcctga
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