Eikenella corrodens: SAMEA4412678_0133
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Entry
SAMEA4412678_0133 CDS
T05039
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ecor
Eikenella corrodens
Pathway
ecor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMEA4412678_0133 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecor03021
]
SAMEA4412678_0133 (rho)
03019 Messenger RNA biogenesis [BR:
ecor03019
]
SAMEA4412678_0133 (rho)
Transcription machinery [BR:
ecor03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SAMEA4412678_0133 (rho)
Messenger RNA biogenesis [BR:
ecor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SAMEA4412678_0133 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA
AAA_25
OB_RNB
S1CSD-TOTE-2
AAA_22
NACHT
Mor
Motif
Other DBs
NCBI-ProteinID:
SNW06244
UniProt:
A0A1A9RSQ5
LinkDB
All DBs
Position
1:123810..125069
Genome browser
AA seq
419 aa
AA seq
DB search
MHVSELQTQHISKLLEMAEQHGIENANRLRKQDLVFSIVRHMMKQGESFSCSGTLEILPD
GFGFLRSTDTSYLASPDDIYVSPNQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDKIN
GDDPEVCKHKILFENLTPLFPTRPIKLERDIKAEENITARAIDLVSPIGMGQRALLVAPP
KTGKTVMLQNIAHAITANYPEVVLIVLLIDERPEEVTEMTRSVRGEVVASTFDEPAARHV
QVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVAPTSGKILTGGMDANALHRPKRF
FGAARNIEEGGSLTIIATALVETGSRMDDVIFEEFKGTGNMELHLDRRMAEKRVFPAINI
NKSGTRREEMLVSNDRLQRMWLLRKFLHPMDDLEATEFLVGKLKDSKNNDEFFELMRGK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcacgtttccgaactacaaacccagcacatttccaaacttttggaaatggccgaacaa
cacggcattgaaaacgccaaccgcctacgcaaacaagatttggtgttttccatcgtccgc
cacatgatgaaacagggcgaaagcttcagctgctccggcacgctcgaaatcctgcccgac
ggcttcggcttcttgcgcagcaccgacacttcctatctggccagccccgacgatatctac
gtttcccccaaccaaatccgccgcttcaacctgcacaccggcgacaccatcgaaggcagc
gtgcgcgtgcccaaagacaacgagcgctacttcgccctcgtgcgcctcgataaaatcaac
ggtgacgacccggaagtgtgcaaacacaaaatcctgtttgaaaaccttacccccctcttc
cccacccgtccgatcaagctcgaacgcgacattaaggccgaagaaaatatcaccgcccgc
gccatcgatttggtttcccccatcggcatgggccagcgcgctcttttggtggcgccgccc
aaaaccggcaaaaccgtgatgttgcaaaatattgcccacgccattactgccaactatccc
gaagtggtgctgattgtgctgctgatcgacgagcgccccgaagaagtaaccgaaatgacc
cgctccgtgcgcggcgaagtggtggcctccaccttcgacgaacccgccgcccgccacgtt
caggtagccgaaatggtgattgaaaaagccaagcgcatggtggagcacaaaaaagacgtg
gtgatcctgctcgactccatcacccgcctggcgcgcgcctacaacaccgttgcccccacc
tccggcaaaatcctcaccggcggcatggacgccaacgccctgcaccgccccaaacgcttc
ttcggcgccgcccgcaacatcgaagaaggcggctcgctcaccatcatcgccaccgcgttg
gtggaaaccggcagccgcatggacgatgtgatttttgaagaattcaaaggcacgggtaac
atggagctgcacctcgaccgccgcatggccgaaaaacgcgtgttccctgccatcaacatc
aacaaatccggcacccgccgcgaagaaatgctcgtttctaacgaccgcctgcaacgcatg
tggctgctgcgcaaattcctccacccgatggacgacctcgaagccaccgaattcctggtg
ggcaaactcaaagacagcaaaaataacgacgagtttttcgagctgatgcgcggcaaatag
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