Eikenella corrodens: SAMEA4412678_0198
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Entry
SAMEA4412678_0198 CDS
T05039
Symbol
recD
Name
(GenBank) Exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ecor
Eikenella corrodens
Pathway
ecor03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ecor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SAMEA4412678_0198 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecor03400
]
SAMEA4412678_0198 (recD)
Enzymes [BR:
ecor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SAMEA4412678_0198 (recD)
DNA repair and recombination proteins [BR:
ecor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SAMEA4412678_0198 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
NAT10_TcmA_helicase
UvrD-helicase
SH3_13
AAA_22
T2SSE
SLFN-g3_helicase
AAA_16
RecD_N
PhoH
AAA_5
AAA
SRP54
NTPase_1
AAA_28
nSTAND3
DEAD
AAA_7
UvrD_C
AAA_29
KTI12
ATPase
Motif
Other DBs
NCBI-ProteinID:
SNW06494
UniProt:
A0A8B4GCL1
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All DBs
Position
1:complement(189775..191541)
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AA seq
588 aa
AA seq
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MLGFTAHLPPVPPVGYLKESAMIEYRYPAAQAAAEVLQRLAPQTAEPVLPLLDELFAAQE
GGHSYITLAPQEAEALRQAAPVVGDGGAFTPLVLRGRRLFSGRLFALERSVAAELQRIAH
NRVRLPENAGLRQRLRDWFPDAGHNGQRLAAALAVLQPLMLVTGGPGTGKTTTVAKLLAL
LCADAVEMPRIALTAPTGKAAAHMTRSLHRALSSFKVGSEQVLQHLTVLEGQTVHRLLKL
NPVVGYSKFNREQPLPFDIVVADEASMLDLPLLHQLLCAIPEHGRLILLGDENQLPPVGI
GAVLPVLAQPTVLTAKEAAQLAEWLPEGVPFEVRDNPPPLAGNVARLEYSHRFDPQRGVG
ALAQAVVNGEAAAAEAAFARFTDDLFRLPETPAALARHFTKQYEAYWQAVNSGDPAACFS
AQQQLVVLAARRSQAAEFNREYRKLLAAQGRAAEQGWFAGQVLMVAENDYAVNVFNGDIG
IVLPHGDGLAAFFPDAGGFRAVSLSRLPAHDTAFAMTVHKSQGSEYQEVWLLGDEADSAL
FDRTLLYTAITRARRRFGYAGQMSALIAAVQRKNHRRTGLGEALQSLK
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgcttggttttaccgcccatttgccgcctgtgccaccagtaggctacctgaaagaatcc
gctatgatcgaataccgttaccccgccgcccaagctgctgccgaagtgttgcagcgtttg
gcaccgcagaccgccgagccggtgctgccgctgttggacgaactgtttgccgcgcaagag
ggcggccacagctacatcacgctcgcgccgcaagaggcggaggcgttgcggcaggccgcg
ccggtggtgggcgatggcggcgcgttcacgcctttggtgttgcgcgggcggcggctgttt
agtggcaggctgtttgcactagagcgcagcgtggccgccgaattacaacggattgcccat
aatcgggtgaggctacctgaaaacgccgggctgcggcaacggttgcgcgattggtttccc
gatgccgggcataacgggcagcggctggctgccgcgctggcggtgttgcagccgctgatg
ctggtaactggcgggccgggcacgggcaaaaccaccacggtggctaagctgctggcgctg
ctgtgtgccgatgcggtcgagatgccgcgcatcgcgctcaccgcccccaccggcaaggct
gccgcccacatgacccgttcgctgcaccgtgcgttgagtagctttaaggtgggtagcgaa
caggtgttgcagcatttgacagtattggaaggacaaactgtccaccggttgctgaagctg
aacccagtagtcggctattcgaaatttaaccgtgagcagccgctgccttttgatattgtg
gtggccgacgaggcttccatgctggatttgccgctgctgcaccaattattgtgcgccatt
cccgagcatggccgcctgattttgttgggcgatgaaaaccagctgccaccagtgggcatc
ggtgctgtattgcccgtgctggcgcagcccaccgtgctcacggctaaagaagctgcccag
ttggccgagtggctgcccgaaggcgtgccgtttgaagtgcgggataacccgccgcccttg
gccggcaacgtggcgcggttggaatacagccaccgtttcgatccgcagcgcggcgtgggc
gcattggcacaggccgtggtgaacggggaggctgccgccgccgaagccgcgtttgcccgc
tttaccgacgacttgttcaggctacctgaaacccccgccgccttggcgcggcactttacc
aaacagtacgaggcctactggcaggcggtaaacagcggcgacccggcggcctgcttttcc
gcccagcagcagttggtggtgctggccgcacggcgcagccaggcggcagagttcaaccgc
gaataccgcaagctcctggccgcgcagggtagggcggcggaacagggctggtttgccggg
caggtgctgatggtggcggaaaacgattatgccgtgaacgtgtttaacggcgacattggc
atcgtgctgccgcacggcgacgggctggctgcgtttttccccgatgccggcggcttccgc
gccgtatcgctcagccggctgcccgcgcacgataccgccttcgccatgaccgtacacaaa
agccaaggctcggaataccaggaagtgtggctcttgggcgacgaggccgactccgccctg
ttcgaccgcaccctgctctacaccgccatcacccgcgcccgccgtcgcttcggctacgcc
ggccagatgagtgcccttattgccgccgtgcaacgcaaaaaccaccgccgtaccggtttg
ggcgaggcattgcaatcgctaaagtaa
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