Eikenella corrodens: SAMEA4412678_1140
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Entry
SAMEA4412678_1140 CDS
T05039
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ecor
Eikenella corrodens
Pathway
ecor03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ecor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAMEA4412678_1140 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecor03021
]
SAMEA4412678_1140 (rpoC)
03400 DNA repair and recombination proteins [BR:
ecor03400
]
SAMEA4412678_1140 (rpoC)
Enzymes [BR:
ecor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAMEA4412678_1140 (rpoC)
Transcription machinery [BR:
ecor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAMEA4412678_1140 (rpoC)
DNA repair and recombination proteins [BR:
ecor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAMEA4412678_1140 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Peptidase_M23
DUF5979
Motif
Other DBs
NCBI-ProteinID:
SNW08645
UniProt:
A0A1A9RQA0
LinkDB
All DBs
Position
1:1140150..1144325
Genome browser
AA seq
1391 aa
AA seq
DB search
MNLSNLFNPLQAAGMEEEFDAIKIGIASPETIRSWSYGEVKKPETINYRTFKPERDGLFC
AKIFGPVKDYECLCGKYKRLKFKGVTCEKCGVEVTLSKVRRERMGHIELAAPVAHIWFLK
SLPSRLGMVLDMTLRDIERVLYFEAFVVTDPGMTSLQRRQLLTEEDYYAKLDEYGEDFDA
KMGAEGIRELLRSLDVPAEIEILRQELESTGSETKIKKLAKRLKVLEAFQRSGMKLEWMI
MDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELHAPDIIVRNEKRM
LQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVG
PYLRLHQCGLPKRMALELFKPFIFHKLEVRGEAATVKAAKKLVEQEVPVVWDILDEVIRE
HPIMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQM
EARTLMLASNNVLSPANGEPIIVPSQDIVLGLYYMTRDKINGKGEGSLFSDVKEVHRAYY
TKQVELGTKITVRLQEWVKNDQDEFEPVTNRYETTVGRALLSEILPKGLPFEYINKALKK
KEISRLINASFRLCGLRDTVIFADHLMYTGFSFAAKGGISICVDDMEVPKEKAKLLAEAN
AEVKEIEDQYRQGLVTNGERYNKVVDIWGRAGDKIAKAMMDNLSKQKVIDREGKEVDQES
FNSIYMMADSGARGSAAQIKQLSGMRGLMAKPDGSIIETPITSNFREGLTVLQYFIATHG
ARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTNDGFVMKAVVQGGDVIEALRDR
ILGRVTAQDVVDPSSGATLVEAGTLLNEQLVDLIDRSGVDEVKVRTPITCKTRYGLCAKC
YGRDLARGKLVNTGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAASQVEAKSNGTA
RFSSQMRYVANNKGELVVIGRSCELVIHDEVGRERERHKVPYGATLLVQDGSAVKAGQTL
ATWDPHTRPMITEYAGRVRFENVEEGVTVTRQTDEITGLSTLVVIDGKRRSSTSKLLRPT
VKLSDENGEEVTVPGTETPVSMAFPVGAVITVREDQEVGKGDVLARIPQASSKTRDITGG
LPRVAELFEARVPKDAGMLAEVTGTVSFGKETKGKQRLVITDLEGAAHETLISKEKQILV
HDGQVVNRGEIIVDGSVDPHDILRLQGIEALARYIVQEVQEVYRLQGVRISDKHIEVIIR
QMLRRVNIADAGETGFITGEQVERGDVMQANERAVAEGKEPARFDNILLGITKASLSTDS
FISAASFQETTRVLTEAAIMGKKDDLRGLKENVIVGRLIPAGTGLTYHRSRRAQWQAHHE
AQVNEQVDEAE
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgtcgaacctgtttaaccccctgcaagctgccggcatggaagaagaattcgat
gccatcaaaatcggcattgcttcgcccgaaaccatccgctcttggtcgtacggcgaagtg
aagaagccggaaaccatcaactaccgtaccttcaagccggagcgcgacggcttgttctgc
gccaaaatcttcggcccggtaaaagactacgaatgcttgtgcggcaaatataagcgtttg
aaatttaaaggcgtaacctgcgaaaaatgcggcgtggaagttaccctttccaaagtgcgc
cgcgagcgcatggggcatattgagctggctgcgcctgttgcccatatttggttcttgaaa
tcattgccttcccgcctcggcatggtattggacatgaccctgcgcgatattgagcgtgtg
ctgtatttcgaagcctttgtggtaaccgaccccggcatgacctcgctgcaacgccgccag
ctgctgactgaagaagactactacgccaagctggatgaatacggcgaagacttcgatgcc
aaaatgggtgccgaaggtattcgcgaactgttgcgttcgctggacgtgccggccgaaatc
gaaatcctgcgccaggaattggaaagcaccggctccgaaaccaaaatcaaaaagctggcc
aaacgcctgaaagtactggaagccttccagcgcagcggcatgaagctggaatggatgatt
atggacgtgctgcccgtgctaccgcccgatttgcgtccgttggtgccgttggacggcggt
cgttttgccacttcggatttgaacgacctttatcgtcgcgtgatcaaccgcaacaaccgt
ctcaaacgcctgctggagctgcacgcacccgacatcatcgtgcgcaacgaaaaacgcatg
ttgcaggaagcagtagacagcctgttggacaacggccgtcgcggtaaagccatgaccggc
gccaacaaacgcccgctcaaatcgctggccgacatgattaaaggtaaaggcggccgcttc
cgtcaaaacctgttgggtaaacgcgtagactactccggccgttccgtgattaccgtaggc
ccctacctgcggctgcatcagtgcggcctgcccaaacgcatggccttggaattatttaaa
ccgttcatcttccacaaactggaagtgcgcggcgaagcggctaccgtgaaagcggcgaaa
aagctggtggagcaggaagtgccggtggtgtgggatattttggatgaagtgatccgcgaa
catccgattatgctcaaccgcgccccgaccctgcaccgcctaggtattcaggcttttgag
ccgattctgattgaaggcaaggccattcagctgcaccccttggtgtgcgccgcgttcaac
gccgacttcgacggtgaccaaatggccgtacacgtgccgttgagcctggaagcacaaatg
gaagcccgtaccctgatgctggcctccaacaacgtgctctcgcccgccaacggcgagccg
attatcgtgccgtctcaagatatcgtattgggtctctactacatgacccgcgacaaaatc
aacggcaaaggcgaaggcagcctgttctccgacgtgaaagaagtgcaccgtgcttactac
accaagcaggtggaattgggcaccaaaatcaccgttcgtttgcaggaatgggtgaaaaac
gaccaagacgagttcgagccggttaccaaccgctacgaaaccacggttggccgtgcctta
ttgtccgaaatcctgcccaaaggcctaccgtttgagtacatcaacaaggcactgaagaaa
aaagaaatctcccgcctgattaacgcttcgttccgtctgtgcggcttgcgcgatacggta
atttttgccgaccacctgatgtacaccggcttcagcttcgcagccaaaggcggcatctcc
atctgcgtggacgatatggaagtgccgaaagagaaagccaagctcttggccgaagccaac
gccgaagtgaaggaaattgaagaccaataccgccaaggtttggtgaccaacggcgagcgc
tacaacaaagtggtggatatttggggccgtgccggcgataaaattgccaaggcgatgatg
gacaacctttccaaacagaaagtcatcgaccgcgaaggcaaagaagtggatcaggagtcg
ttcaactcgatctacatgatggccgactccggtgcgcgtggttctgccgctcagattaaa
cagctttccggtatgcgcggtttgatggccaagccggacggttcgattatcgaaaccccg
attacctccaacttccgcgaaggcctcaccgtattgcaatactttatcgccacccacggt
gcgcgcaaaggtctggccgataccgcgttgaaaaccgccaactccggttacctgacccgc
cgcctggtggacgtaacccaagatttggtggtggtggaagacgattgcggcaccaacgac
ggtttcgtaatgaaagccgtggtacagggtggtgatgtgattgaagccctgcgtgatcgc
attttgggccgagtaaccgcgcaagacgtggtggatccgtccagcggcgctaccttggtg
gaagctggcaccctgctcaacgagcagttggtggatctgatcgaccgctccggcgtggat
gaggtgaaagtccgcaccccgattacctgtaaaacccgttatggtttgtgcgccaagtgc
tacggtcgcgatttggcacgcggcaaactggtgaacaccggcgaagccgtgggcgtgatt
gccgcccaatccatcggtgagcccggtacacagctgaccatgcgtacctttcacatcggt
ggtgccgcctcccgtgccgccgccgccagccaagtggaagccaaatccaacggtaccgcc
cgtttcagcagccagatgcgttatgtggccaacaacaaaggcgaattggtagtgatcggc
cgttcgtgcgaactggtgattcacgacgaagtgggtcgcgagcgcgaacgtcacaaagtg
ccctatggtgccactttgttggtgcaggatggctctgcggtgaaagctggccaaaccctg
gccacttgggatccgcatacccgcccgatgattaccgaatacgccggccgtgtgcgcttt
gaaaacgtggaagaaggcgtaaccgttacccgtcaaaccgacgaaatcaccggtctctcc
actttggtggtgatcgacggcaaacgccgctccagcaccagcaagctgctgcgccccacc
gtgaaactgtcggacgaaaacggcgaagaagttaccgtgcccggtaccgaaacccccgtt
tctatggccttccccgtgggtgcagtgattaccgtgcgcgaagatcaggaagtgggcaag
ggcgacgtgctggcgcgtatcccgcaggcttcctccaaaacccgcgatattactggtggt
ctgccgcgcgtggccgagctgtttgaagcccgcgtgcccaaagatgccggcatgttggcc
gaagtaaccggcacggtgtctttcggtaaagaaaccaaaggcaaacagcgtttggtgatt
accgacttggagggtgcggcacacgaaaccctgatttccaaagagaaacagattctggtg
cacgacggccaagtagtgaatcgtggcgagattatcgtagacggctcggttgatccgcac
gacatcctgcgcctgcaaggcatcgaagcgctggcacgctacatcgtgcaagaagtgcaa
gaagtgtaccgcctgcaaggtgtgcgcatttccgataagcacattgaagtgatcatccgc
cagatgctgcgccgcgtgaacattgcagacgccggcgaaaccggtttcatcaccggtgag
caggtggagcgtggcgacgtaatgcaggccaacgaacgcgccgttgccgaaggcaaagaa
ccggcacgcttcgacaacatcctgctgggtatcaccaaggcttcgctctctaccgacagc
ttcatttccgcggcttccttccaggaaaccacccgcgtgctcaccgaagccgccatcatg
ggcaaaaaagacgacctgcgcggcttgaaggaaaacgtgattgtcggccgcctgatcccg
gccggtaccgggctcacttaccatcgcagccgccgtgcgcagtggcaggcgcatcacgaa
gcgcaagtgaacgagcaggtggatgaagccgaataa
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