Eikenella corrodens: SAMEA4412678_1216
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Entry
SAMEA4412678_1216 CDS
T05039
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ecor
Eikenella corrodens
Pathway
ecor03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ecor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAMEA4412678_1216 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecor03021
]
SAMEA4412678_1216 (rpoA)
03400 DNA repair and recombination proteins [BR:
ecor03400
]
SAMEA4412678_1216 (rpoA)
Enzymes [BR:
ecor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAMEA4412678_1216 (rpoA)
Transcription machinery [BR:
ecor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAMEA4412678_1216 (rpoA)
DNA repair and recombination proteins [BR:
ecor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAMEA4412678_1216 (rpoA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
SNW08766
LinkDB
All DBs
Position
1:1228567..1229544
Genome browser
AA seq
325 aa
AA seq
DB search
MQNSTYEFLKPRQIDVDALSATRAKVFMEPFERGFGYTLGNALRRILLSSMNGFAPTEVV
IDGALHEYSTLDGVQEDVVDILLNIKGVVFKLQGRDSVQVSLNKSGSGVVTAADLELPHD
VEVINPEHVICRLSDNGKIELTITVEKGRGYQTVSSRNDDHKQIGAIHLDANFSPVHRVS
FEVQAARVEQRTDLDCLVLDIETNGAIDPEEAVRRAARILIDQMSVFADLEGTPVEESKE
EAPPIDPILLRPVDDLELTVRSANCLKAEDIYYIGDLIQRTETELLKTPNLGRKSLNEIK
EVLASKGLTLGSKLDVWPPVGLDKP
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacagcacctatgaatttctgaagccgcgacagattgatgtagatgccttgtct
gcaacgcgtgcaaaagtttttatggagccatttgagcggggttttggttatacattaggc
aatgcattgcgtcgtatattgctgtcatcaatgaatggttttgcacctacagaggtagta
attgatggcgcactgcatgaatattctactttagatggtgttcaggaagatgttgtagat
atcttgctgaatattaaaggtgtggtattcaagcttcagggtcgtgattcggttcaggtt
agcttaaataaatcaggtagtggtgtggtaactgctgctgatttagaattgccgcatgat
gtggaagtaattaatccagaacatgttatttgccgcttgtctgataatggcaagattgaa
ctgacaattactgtggaaaaaggccgtggctatcaaactgttagcagcaggaatgatgac
cacaaacaaattggcgctattcatttggatgccaacttttctccagttcatcgtgttagc
tttgaggttcaggctgctcgtgtggagcagcggacggacttagattgcttggttttagat
attgaaaccaatggtgcaattgatccagaggaggctgtgcgtcgggcagctcgtatactg
attgatcagatgtcagtatttgctgacttggaagggacgccggtcgaggagtcgaaagaa
gaagcaccgcctatcgacccgattctgctacgcccagtagatgatttggaattgacagtt
cgctcagcgaattgcttgaaagctgaagacatctactatattggtgatttgattcagcga
accgaaactgaattgctgaagactccgaatttgggcagaaaatctttgaacgagattaaa
gaagtattggcttcaaaaggcttgaccttgggttcgaaactagatgtgtggccacctgtt
ggtttggataagccttaa
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