Eikenella corrodens: SAMEA4412678_1396
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Entry
SAMEA4412678_1396 CDS
T05039
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
ecor
Eikenella corrodens
Pathway
ecor03030
DNA replication
ecor03430
Mismatch repair
ecor03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ecor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAMEA4412678_1396 (holB)
03430 Mismatch repair
SAMEA4412678_1396 (holB)
03440 Homologous recombination
SAMEA4412678_1396 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecor03032
]
SAMEA4412678_1396 (holB)
03400 DNA repair and recombination proteins [BR:
ecor03400
]
SAMEA4412678_1396 (holB)
Enzymes [BR:
ecor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SAMEA4412678_1396 (holB)
DNA replication proteins [BR:
ecor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SAMEA4412678_1396 (holB)
DNA repair and recombination proteins [BR:
ecor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SAMEA4412678_1396 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
AAA
AAA_16
TsaE
AAA_22
RNA_helicase
QueC
AAA_14
DUF6587
Motif
Other DBs
NCBI-ProteinID:
SNW09430
UniProt:
A0A8B4G499
LinkDB
All DBs
Position
1:complement(1411799..1412782)
Genome browser
AA seq
327 aa
AA seq
DB search
MIYPWHESAWRQLAAQWGNRPNAWLLTGRRDTGKTAFARHLAQALLCEQPQAEHQPCGSC
PSCHLFAQGSHPDYYELAPELPAEGESARKLLQIKIDAVRAVLSPLLQSSVRGGLRVVLV
QPAETMNTQAANALLKMLEEPPASVVFLLVTHNKDRLLPTIKSRCRPFLLPAPSAEEALG
YLKTQNTPQAEVLLAFHSGAPLFAAEPEQDTMREELCQLLAKPRLLAMLDYAAAFDKQKW
PLAVFLDWLHKWLADTALAQQNLPPIYYPQHQAAIFQVASRTRGTTLFQLVRTLNHLSPY
GRHTLSVRMQIENLLTNYLAFWQNKPL
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgatttatccttggcatgaatccgcttggcggcagttggctgcccaatggggcaaccgc
cccaacgcttggttgcttacaggccggcgcgataccggcaaaaccgcgtttgcccgccat
ctagcacaggcgctgctgtgcgaacagccgcaggccgaacaccagccttgcggcagctgc
ccttcgtgccacctgttcgcccaaggcagccatccggactactacgaactcgcgcccgag
ctgcccgccgaaggcgaaagcgcgcgcaagctgctgcaaatcaaaatcgacgccgtgcgc
gccgtgctatcgccgctgctgcaaagctccgtgcgcggcgggctgcgtgtggtgctggtg
cagccagcggaaaccatgaatacccaagccgccaacgcgctgttgaaaatgctggaagaa
ccgcccgcatcggtggtgttccttttggtaacccacaacaaagaccgcctgctgcccacc
attaaaagccgctgccgccccttcctgctgcccgccccgagtgccgaagaagccttaggc
tacctgaaaacgcaaaacacccctcaagccgaagtcctgcttgccttccacagcggcgcc
ccgctgtttgcagccgagccggagcaagacacgatgcgcgaagagctgtgtcaactgctg
gccaaaccgcgcctgttggccatgctggattacgccgccgctttcgacaagcaaaaatgg
ccgctggccgtgtttctcgactggctgcacaaatggctggccgacaccgcgctcgcccaa
caaaacctgcccccgatctactatccgcaacaccaagccgccatttttcaggtagcctcc
cgcacccgggggacaaccttattccaactggtacgcaccctaaaccacctcagcccttac
ggccggcataccttaagtgttagaatgcagattgaaaatttgctaaccaactaccttgct
ttctggcaaaacaaaccgctttaa
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