Eikenella corrodens: SAMEA4412678_1414
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Entry
SAMEA4412678_1414 CDS
T05039
Symbol
rng_2
Name
(GenBank) Ribonuclease G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ecor
Eikenella corrodens
Pathway
ecor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMEA4412678_1414 (rng_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecor03019
]
SAMEA4412678_1414 (rng_2)
03009 Ribosome biogenesis [BR:
ecor03009
]
SAMEA4412678_1414 (rng_2)
Enzymes [BR:
ecor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SAMEA4412678_1414 (rng_2)
Messenger RNA biogenesis [BR:
ecor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SAMEA4412678_1414 (rng_2)
Ribosome biogenesis [BR:
ecor03009
]
Prokaryotic type
rRNA processing factors
SAMEA4412678_1414 (rng_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_InsA
Motif
Other DBs
NCBI-ProteinID:
SNW09464
UniProt:
A0A8B4GE32
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All DBs
Position
1:complement(1432666..1435476)
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AA seq
936 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDY
GTDRHGFLPFKEVSRAYFQDYDGGRARIQDVLQEGMQVIVQVEKDERGNKGAALTTFISL
AGRYLVLMPNNPRGGGISRRIEGEERQELKAAMSQLDVPHGMSLIARTAGIGRSVEELQW
DFNYLLQLWRAIEEAGNAHQDPYLLFMESSLLIRAIRDHYRSDIGEILIDNREVFDQVQE
FMSYVMPHNVGKLKYYDDHIPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSVD
VNSARSTRGADIEETAFQTNMEAAEEVARQMRLRDLGGLIVIDFIDMENPKHQRDVENTL
RDALRKDRARVQMGKLSRFGLLELSRQRLRPSLGESSHVACPRCAGTGVIRGIESTALHV
LRIIQEEAMKDNTEEVHAQVPVDVATFLLNEKRAELFGLEERLDVSILMIPNTHLENPHY
NITRVRPDDVDDDAEPSYKQVEIPEEDDSQTLEIGRQAKPVKPEPAVKGIKHSSPAPVVQ
QPAEPGLLAGIGAWFAKLFGGGETKPAEAPAANNGRNGGNRGKAPQNRNRRNRSQQRGQN
GNSRPPRQQNADDAETLDNRTPQQLAEKSAAEQQPNPRQRRRQRKDSDVQVASAENNKLQ
AASQAADIPERIADDAGSPAENQERGSERGDRERNNERGERNERRSGRDRRQDNGQRNGK
GRGRQRNIPSAQKIIQYLDIPLQAELVKSAADVVLGLHTEAPATMPQPNEADINKPLVIT
IPEVADEADAPTFVFAEENTAEAAETVNQTAVASPVAETTREEAVVVETVAVEASSVETQ
AAPEAASADDSIAAAAQAVETATTAVAQPVPQQTAAEPAAADLGGLVLVQTDPAALSAVQ
PEPEQPKGLRRADVAPAAPTAVPEPQQLQQVETHRS
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttatttaacgccacccaggccgaagagctgcgtgtggcgattgtagac
gggcaaaacctgctcgatctcgacattgaaacgctgggcaaagaacagcgcaaaggcaat
atctacaaaggcatcatcacccgcatcgagccctcgctcgaggcttgcttcgtggactac
ggcaccgaccgccacggcttcctccccttcaaagaagtttcccgcgcctacttccaagac
tacgacggcggccgcgcccgcatccaagacgtattgcaagaaggtatgcaggtcatcgtg
caggtggaaaaagatgaacgcggtaacaaaggtgccgcgctcaccaccttcatcagcctg
gccggccgctatctcgtgctcatgccgaacaatccgcgcggcggcggcatttcccgccgt
atcgaaggcgaagagcgccaagagcttaaagccgccatgagccagctcgacgtgccgcac
ggcatgagcctgatcgcccgcaccgccggcatcggccgcagtgtggaagagctgcaatgg
gatttcaactatctgttgcaactgtggcgcgccatcgaagaagccggcaacgcccatcaa
gacccttatctcctatttatggagagctccctgctcatccgtgccatccgcgaccactac
cgctccgacatcggcgaaatcctcatcgacaaccgcgaagtgttcgaccaagtgcaggag
ttcatgagctatgtgatgccgcacaacgtgggcaagctcaaatactacgacgaccacatc
ccactcttctcccgcttccaaatcgagcaccaaatcgaaagcgccttctcgcgctccgtg
agcctgccctccggcggcgccatcgtaatcgaccacaccgaagccctggtttccgtagac
gtaaactccgcccgctccacccgcggtgccgacatcgaagaaaccgccttccaaaccaat
atggaagccgccgaagaagtggcccgccaaatgcgcctgcgcgacttgggcggcctgatc
gtgatcgacttcatcgacatggaaaaccccaagcatcagcgcgatgtggaaaacaccctg
cgcgacgcgctgcggaaagaccgcgcccgcgtgcagatgggcaaactttcccgcttcggc
ctgcttgagctttcccgccagcgcctgcgcccctccctgggcgaaagcagccacgtggcc
tgcccgcgctgcgccggcaccggcgtgatccgcggcatcgaatccaccgccctgcacgtg
ttgcgcatcatccaagaagaagcgatgaaggacaacaccgaagaagtgcacgcccaagtg
ccggtggacgtggccaccttcttgctcaacgaaaaacgcgccgagctgttcggcctggag
gagcggctggacgtgtccatcctgatgattcccaacacccatctggaaaatccgcactac
aatatcacccgcgtgcgccccgacgatgtggacgacgatgccgaacccagctacaaacaa
gtcgaaatccccgaagaagacgacagccaaaccttggaaatcggccgccaagccaaaccg
gtgaaacctgagcccgccgtaaaaggcatcaaacacagcagccccgcccccgtggtgcag
cagcctgccgagcccggcctgctggccggtatcggcgcctggtttgccaaactgttcggc
ggcggcgaaaccaaacctgccgaagcccctgcagccaataacgggcgcaacggcggcaat
cgcggcaaagccccgcaaaaccgcaaccgccgcaaccgcagccagcagcgcggccaaaac
ggcaacagccgcccgccgcgccagcaaaatgccgacgatgccgaaactttggacaaccgc
acaccgcaacagctggcagagaaatccgctgccgaacagcagcccaatccgcgccaacgc
cgccgccaacgcaaagacagcgacgttcaggtagcctcggctgaaaacaataagctgcag
gccgccagccaagcggctgacatccccgaacgcattgctgacgacgccggcagccctgca
gaaaaccaagagcgtggcagcgaacgcggcgatcgcgagcgcaacaatgagcgcggcgaa
cgcaacgaacgccgctccggccgcgaccgccgccaagacaacggccagcgcaacggcaaa
ggccgaggtcgccagcgcaacatcccctctgcacagaaaatcatccaatatctggatatt
ccgctgcaagccgagctggtgaaatctgccgccgacgtggtcttgggtctgcacaccgaa
gcgcccgccaccatgccgcagcccaatgaggccgacatcaacaaaccgctggtcatcacc
atccccgaagtggccgatgaagccgatgcacccaccttcgtgtttgccgaagaaaacacc
gccgaagctgctgaaaccgtaaaccagactgctgttgcaagcccggttgcggaaacaacg
cgggaagaagccgttgtggtggaaaccgtggccgtagaagcctcatccgtcgaaacccaa
gccgctccggaagctgcatctgccgatgattccattgctgccgcagcccaagccgtagaa
acggcaacgacagccgtggcgcaacctgttccgcaacaaaccgcagccgaacccgcggcc
gccgacctaggtggtctggtattagtgcaaaccgatcccgccgcgctctccgccgttcag
cccgagcctgaacagcccaaaggcctgcgccgcgccgatgttgcccccgccgccccgact
gccgtgcccgagccgcagcaactgcagcaagtggaaacccaccgcagctga
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