Escherichia coli O25b K100 H4-ST131 EC958 (UPEC): EC958_0291
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Entry
EC958_0291 CDS
T04373
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ecos
Escherichia coli O25b:K100:H4-ST131 EC958 (UPEC)
Brite
KEGG Orthology (KO) [BR:
ecos00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecos03019
]
EC958_0291 (hrpB)
Enzymes [BR:
ecos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EC958_0291 (hrpB)
Messenger RNA biogenesis [BR:
ecos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EC958_0291 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
DEAD
Helicase_C
AAA_22
HA2_N
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CDN80532
UniProt:
A0AA36KUN4
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Position
175335..177764
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AA seq
809 aa
AA seq
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MSSLPVAAVLPELLAALDGASQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA
ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV
ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS
FPVERRYLPLPAHQRFDEAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLTSRIGSDV
LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP
RTGLTRLVTQRVSQASMTQRAGRAGRLEPGICLHLIAKEQAERAAAQSEPEILQSDLSCL
LMELLQWGCSDPAQMSWLDQPPTVNLLAAKRLLRMLGALDGERLSAQGQKMAALGNDPRL
AAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFLRNQPAWQQRSQQLLKRLNVRG
GEADSSLIAPRLAGAYADRIARRRGQEGRYQLANGMGAMLDADDALSRHEWLIAPLLLQG
SSSPDARILLALPVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPL
AKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAT
LETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWVMQQRLDSELPAHYTVPTGSRIAIRYH
EDNPPALAVRMQEMFGEASNPTIAQGRVPLVLELLSPAQRPLQITRDLSAFWKGAYREVQ
KEMKGRYPKHVWPDDPANTAPTRRTKKYS
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgtcgttgcccgttgctgccgtcttacctgagttacttgctgccctcgatggtgca
tcgcaggtgttattaagtgcgccgaccggggccgggaaatcaacctggctgccgctgcaa
ctgctggcgcatcccggcattaacgggaaaattatcctgctggagccgcgtcgtctggcg
gcgcgtaacgttgcgcaacgactggcggagctgcttaacgaaaagccaggcgataccgtt
ggctaccggatgcgtgcgcaaaactgcgtcgggccgaatacccgcctggaagtggttacc
gaaggcgtgctgacgcggatgatccagcgtgacccggaactgagcggtgttggattggtg
atccttgatgaatttcatgagcgcagcttgcaggcggatttggcgttggcgctgttactc
gatgtgcaacaaggtctgcgtgatgaccttaaactgctgattatgtcggctacgctggac
aacgaccgcttgcagcaaatgctgccagaagcgcccgtcgtcatctcagaagggcgctcg
tttccagttgaacgccgttatttgccgctgcccgctcatcagcgttttgacgaagccgtc
gcggttgccaccgccgaaatgctgcgtcaggaaagtggatcattactgttatttttacct
ggcgtcggagaaattcagcgtgtgcaggaacaactgacttcacgcatcggcagtgatgtg
ttgctctgcccgctgtatggcgcgttgtcgctgaacgatcagcgaaaagcgatcctcccg
gcaccgcaagggatgcgtaaagtggtgctggcgaccaatattgctgaaaccagtttaacc
atcgaaggtattcgtctggtggtggattgtgcccaggagcgtgtggcgcgttttgatccg
cgtacagggcttacgcggctggttactcaacgtgttagtcaggcgtcgatgacgcaacgt
gccgggcgtgccgggcgtctggagccgggtatctgcctgcatttaatcgccaaagaacaa
gcagaacgcgctgccgcgcaaagtgaaccggaaatattacaaagcgatctttcctgtttg
ctgatggaattactgcaatggggatgcagcgatccggcgcagatgagctggctggatcaa
ccgccaacggtgaatctactggccgcgaaacgcctgttacggatgctgggggcgctggac
ggtgaacggcttagtgcgcaagggcaaaaaatggcagcgctgggtaacgatccgcgttta
gcggcaatgctggttagcgcgaagaacgacgacgaagctgctaccgcggcaaaaattgcc
gccattctcgaagagccgccacggatgggcaatagtgacctgggcgtggcgtttttgcgc
aatcaacccgcctggcagcaacgtagtcagcaactgttaaaacgtttaaacgtacgcggc
ggtgaggcagacagttcgcttatcgcgccgcgacttgccggagcgtatgccgatcgtatt
gctcgccgccgtgggcaagagggacgctatcaactggcgaacggcatgggggcgatgctc
gatgccgacgatgcgcttagccgccacgaatggttgatcgcgccgttattattgcagggc
agttcttcgccggatgcgcggattttactggcgctgccggtcgatattgatgagttagta
caacgctgcccgcagctggtacagcagtctgacaccgtggagtgggatgacgcgcaaggt
acgctgaaagcctggcgtcggctgcaaatcggtcagttgacggtaaaagtgcaaccgctg
gcgaaaccctcggaagacgagttgcatcaggcgatgcttaacggcattcgtgataaaggt
ttaagcgtgctcaactggacggcggaagcggaacagctacgcttgcgtttgttatgtgcc
gcaaagtggttgccggaatatgactggccagcggttgatgatgaaagtttgttggcgacg
ctggaaacgtggctactgccgcatatgacaggcgtacattcgctacgcggcctgaaatca
ctcgatatttatcaggcactgcgtggattacttgattgggtaatgcagcaacgtctggat
agtgaattgcctgcgcattacactgtgccgacgggaagccggatcgccattcgttaccat
gaagataacccgcccgcgctggcggtgagaatgcaggagatgtttggtgaggcctctaat
ccgactatcgcccaggggcgcgtaccgttggtgctggagttgctttcccctgcccaaagg
ccgctgcaaatcacgcgtgatttgagcgccttctggaaaggagcgtaccgtgaggtgcaa
aaagagatgaaagggcgttatcccaaacatgtctggccggacgacccggcaaacaccgca
ccgacgcgacgaacgaaaaagtattcgtga
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