Escherichia coli O25b K100 H4-ST131 EC958 (UPEC): EC958_1311
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Entry
EC958_1311 CDS
T04373
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ecos
Escherichia coli O25b:K100:H4-ST131 EC958 (UPEC)
Pathway
ecos03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ecos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EC958_1311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecos03400
]
EC958_1311
Enzymes [BR:
ecos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EC958_1311
DNA repair and recombination proteins [BR:
ecos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EC958_1311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CDN81572
UniProt:
A0AA36KWL9
LinkDB
All DBs
Position
complement(1230899..1234417)
Genome browser
AA seq
1172 aa
AA seq
DB search
MNSIAYQRYAPYVEAYPNENLTTVMPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAE
RHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLY
QLPSMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQV
MEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHE
FPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYF
PANTLLVNTGDLENSAERFQADTLARFENRGIDPMRPLLPPQSLWLRVDELFSELKNWPR
VQLKTEHLPTKAANANLGFQKLPDLAIQAQQKAPLDALRKFLESFDGPVVFSVESEGRRE
ALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVAR
RRQDSRRAINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYAND
AKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRA
AKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTE
VAMRAAFMAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQIL
AEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTA
TPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLY
NDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGID
IPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASL
EDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLED
LTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDP
ARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGP
TRLKFIQDLSERKTRIEWVRQFMRELEENAIA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcattgcttatcagagatatgccccatatgttgaggcatatcctaacgagaat
ctgacaaccgttatgcctgaacaatatcgttatacgctgcccgtcaaagcgggtgagcag
cgtctgctgggcgagttaaccggcgctgcctgcgcgacgctggtagcagaaattgccgaa
cgtcacgccggtccggtggtactcattgcaccagatatgcaaaatgctctgcgtttgcat
gatgaaatcagccagttcaccgatcagatggtgatgaatctggcggactgggaaaccctc
ccttacgacagtttttcgcctcatcaggacattatctcctcgcgtctttccaccctttac
cagttaccatcgatgcagcgtggcgtactgattgttccggtgaatacgcttatgcagcgc
gtttgcccgcacagctttctccacggtcatgcgctggtgatgaaaaaaggtcagcgcctg
tcacgagatgcattacgaacccaactggacagcgccggttatcgccatgttgaccaggtg
atggagcacggcgaatacgccacgcgcggcgcgttgttggatctcttcccgatggggagt
gagctgccttatcgtcttgatttctttgatgatgaaatcgacagcctgcgggtgtttgac
gtcgatagccagcgcacgctggaggaagtagaagcgatcaatctgttgcccgcgcacgaa
tttccgaccgataaagcggcaattgaactgttccgcagccagtggcgtgataccttcgaa
gtgaagcgcgacccggaacatatttatcagcaagtgagtaaaggcacattacctgccggg
atcgagtactggcagccgctattcttcagcgaaccgctgccgccactgttcagttatttc
cctgccaatacgctgttggtgaatactggcgatctggaaaacagtgccgaacgtttccag
gctgacacgctcgcgcgttttgagaatcgcggcatcgacccaatgcgcccactgttgcca
ccacaatcgctctggctgcgggtggatgagctcttctcagagctgaaaaactggccccgt
gtgcagctaaaaactgaacatttaccgacaaaagcagcgaatgccaatttaggtttccag
aaactgccagacctggccattcaggcacaacaaaaagcgccgctggatgcgctgcgtaag
ttcctcgagtctttcgacggtccggtggtgttctcggtagaaagtgaaggccgccgtgaa
gcgttgggtgaactgctcgcgcgaattaaaattgctccgcaacgcattatgcgtcttgat
gaagccagcgaccgtgggcgttatctgatgattggcgctgcagagcatggttttgtcgat
acggtacgtaatctggcgctgatttgcgaaagcgatctgctcggtgaacgcgttgcccgt
cgtcgtcaggattctcgccgcgccatcaaccccgatacactgatccgtaaccttgcggag
ctgcatattggtcagccggtggtccatctggagcacggcgtcggtcgttatgccggaatg
accacgctcgaagctggaggcattactggcgagtatttgatgctcacctatgccaacgac
gccaaactgtatgttccggtgtcgtcactgcatctgattagccgttacgcgggtggcgca
gaagaaaacgcaccactgcataaacttggtggcgatgcctggtcacgcgcgcggcagaaa
gcggcggaaaaagtgcgtgatgtggcggcggaattgctggatatctacgcgcaacgcgcc
gccaaagagggcttcgcgtttaaacacgatcgcgagcagtatcagttgttctgcgacagc
ttcccgtttgaaaccacgccggatcaggcgcaggccattaatgcggtgcttagtgacatg
tgtcagccgctggcaatggatcgtctggtgtgcggcgatgttggctttggtaaaacagaa
gtggcgatgcgcgccgctttcatggcggtagataaccacaaacaggtggcggtgctggtg
cctaccacccttctcgcgcagcagcattacgacaacttccgcgaccgtttcgccaactgg
ccggtacgtatcgaaatgatctcccgtttccgcagcgccaaagagcagacgcaaatcctt
gcggaagtggcggaagggaaaattgatattctgatcggtacgcacaaactgctgcaaagt
gacgtcaagtttaaagatttaggcctgctgattgtcgatgaagaacaccgcttcggggtg
cgtcataaagagcgcattaaagcgatgcgcgcgaacgtggatattctgacgcttaccgca
acgccgatcccacgtacgctgaatatggcaatgagcggaatgcgcgatctgtcgattatc
gccacgccgcccgcccgtcgtctggcagttaaaacctttgtccgtgagtatgacagtctg
gtggtccgggaggcgatcctgcgtgaaattttgcgcggaggacaggtttattatctctac
aatgatgtggaaaacatccagaaagccgccgaacggctggcagaactggtacctgaagcg
cggattgctatcggtcacgggcaaatgcgtgagcgcgaactggaacgggtgatgaatgat
ttccatcatcaacgtttcaacgtgctggtttgtaccaccattatcgaaaccgggatcgac
attcctaccgccaacaccattatcattgaacgcgcggatcacttcggtctggcacagttg
caccagttgcgcggtcgcgtcgggcgttcgcaccaccaggcatatgcatggctgctgacg
ccgcatccaaaagcgatgactaccgatgcgcaaaaacgtcttgaagcgattgcctcgctg
gaagatctcggtgcaggttttgcgctggcaacgcacgatctggagatccgcggcgcgggt
gaactgcttggcgaagaacaaagcggctcaatggaaaccatcggtttctcgctgtatatg
gagttgctggaaaacgccgtcgatgcgctgaaagccggacgcgagccgtcgctggaagat
ctcaccagccagcaaacagaagtcgagctgcggatgccgtcgctattgccagatgatttc
atccctgacgtgaacacgcgtctgtcgttctacaaacgtattgccagcgccaaaacggaa
aacgaactggaagagatcaaagtcgagcttatcgatcgcttcggcctgctgccggatccg
gcgcgtaccctgctggatattgcccgtctgcgccagcaagcgcagaaactggggatcagg
aagctggaaggtaatgagaaaggcggcgtgatcgaatttgccgagaagaatcacgttaat
ccggcctggttgattggtttgctgcaaaaacagccgcagcattaccgccttgatggtccg
acgcgtctgaagtttattcaggatttgagcgagcggaaaacgcgtatcgaatgggtacgc
cagtttatgcgtgaactggaagagaacgcgatcgcttaa
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