Escherichia coli O6 K15 H31 536 (UPEC): ECP_4016
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Entry
ECP_4016 CDS
T00373
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ecp
Escherichia coli O6:K15:H31 536 (UPEC)
Pathway
ecp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECP_4016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecp03019
]
ECP_4016
03400 DNA repair and recombination proteins [BR:
ecp03400
]
ECP_4016
Enzymes [BR:
ecp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ECP_4016
Messenger RNA biogenesis [BR:
ecp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ECP_4016
DNA repair and recombination proteins [BR:
ecp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ECP_4016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ABG71976
UniProt:
A0A454A9Q0
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All DBs
Position
4190389..4192218
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AA seq
609 aa
AA seq
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MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIP
ALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQISLLY
IAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMAL
TATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGSTDAQIAL
STIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLR
KLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR
AHVDGDDEE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcaggcggaagtgttgaatctggagtccggggctaaacaggttttacaagaaacc
tttggctaccaacagtttcgccccggccaggaagagattatcgacaccgtactttccggt
cgcgattgcctggtcgtcatgcccactggtggcggaaaatccctttgctatcaaatccct
gccttattgctaaacggccttaccgtggttgtctcaccgctgatttcgttgatgaaagat
caggtagatcaactgcaagccaacggcgtggcggcggcgtgccttaactcgacgcaaacc
cgcgagcagcagcttgaagtgatgacaggctgtcgcaccgggcaaatcagcctgctttat
atcgcgccggaacgcctgatgctggataactttcttgagcatctggcgcactggaatccg
gtgttattagccgttgatgaagcgcactgtatctcccaatggggtcacgatttccgcccg
gaatacgctgccctcggtcagctgcgtcagcgttttccgacgctcccgtttatggcgctg
actgccacagccgatgacaccacgcgccaggatatcgtgcgcctgctggggctgaacgat
ccgctgattcaaatcagcagttttgaccgtccgaatattcgctacatgctgatggagaaa
ttcaaaccgctcgatcagttgatgcgttatgtacaggaacaacgcggtaagtcggggatt
atttactgtaatagtcgtgcgaaagtagaagacaccgctgcgcgcctgcaaagcaaggga
attagcgcggcggcctatcatgccgggctggaaaataatgttcgcgctgatgtgcaggaa
aaattccagcgcgatgacctgcaaattgtggtggcgacggtggcgttcggcatgggcatc
aacaagcctaacgttcgcttcgtggtgcattttgatattccgcgcaatatcgaatcctat
tatcaggaaactggacgcgccgggcgtgatggcctgcccgcggaagcgatgctgttttac
gatccggctgatatggcgtggctgcgccgttgtctggaagagaagccgcaggggcagttg
caggatatcgaacgtcataaactcaatgcgatgggcgcgtttgctgaagcgcaaacttgt
cgtcgtttggtattgctgaactattttggcgaagggcgtcaggagccgtgcgggaactgc
gatatctgcctcgatccgccaaaacagtacgatggttcaaccgatgcgcagattgccctt
tccaccattggtcgtgtgaatcagcggtttgggatgggttatgtggtggaagtgattcgc
ggtgctaataatcagcgtatccgcgactatggtcatgacaaactgaaagtctatggcatg
ggccgtgataaaagccatgaacattgggtgagcgtgatccgccagctgattcacctcggc
ctggtgacgcaaaatattgcccagcattctgccctacaactgacagaggctgcgcgtccg
gtgctgcgcggcgaatcctctttgcaacttgccgtgccgcgtatcgtggcgctcaaaccg
aaagcgatgcagaaatcgttcggcggcaactatgatcgcaaactgttcgccaaattacgc
aaactgcgtaaatcgattgccgatgaaagcaatgtcccgccgtacgtggtgtttaacgac
gcaaccttgattgagatggcggagcagatgccgatcaccgccagcgaaatgctcagcgtt
aacggcgttggtatgcgcaagctggaacgctttggcaaaccgtttatggcgctgattcgt
gcgcatgtcgatggtgacgacgaagagtag
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