Escherichia coli O81 ED1a (commensal): ECED1_1242
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Entry
ECED1_1242 CDS
T00827
Symbol
holB
Name
(GenBank) DNA polymerase III, delta prime subunit
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
ecq
Escherichia coli O81 ED1a (commensal)
Pathway
ecq03030
DNA replication
ecq03430
Mismatch repair
ecq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ecq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ECED1_1242 (holB)
03430 Mismatch repair
ECED1_1242 (holB)
03440 Homologous recombination
ECED1_1242 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecq03032
]
ECED1_1242 (holB)
03400 DNA repair and recombination proteins [BR:
ecq03400
]
ECED1_1242 (holB)
Enzymes [BR:
ecq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ECED1_1242 (holB)
DNA replication proteins [BR:
ecq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ECED1_1242 (holB)
DNA repair and recombination proteins [BR:
ecq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ECED1_1242 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
HolB_lid
EPF
Motif
Other DBs
NCBI-ProteinID:
CAR07443
UniProt:
B7MTM9
LinkDB
All DBs
Position
1241743..1242747
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AA seq
334 aa
AA seq
DB search
MRWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCG
HCRGCQLMQAGTHPDYYTLAPEKGKNALGIDAVREVTEKLNEHARLGGAKVVWVTDAALL
TDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV
TMSQDALLAALRLSAGSPGAVLALFQGDNWQARETLCQALAYSVQSGDWYSLLAALNHEQ
APARLHWLATLLMDALKRHHGAAQVTNVDVPGLVVELANHLSPSRLQAILGDVCHIREQL
MSVTGINRELLITDLLLRIEHYLQPGVVLPVPHL
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgagatggtatccatggttacgacctgatttcgaaaaactggtagccagctatcaggcc
ggaagaggtcaccatgcgctactcattcaggcgttaccgggcatgggcgatgatgcttta
atctacgccctgagccgttatttactctgccaacaaccgcagggccacaaaagttgcggt
cactgtcgtggatgtcagttgatgcaggctggcacacatcccgattactacaccctggct
cccgaaaaagggaaaaatgcgctgggcattgatgcggtacgtgaggtcaccgaaaagctg
aatgagcacgcacgcttaggtggtgcgaaagttgtctgggtaaccgatgctgccttacta
accgacgccgcggctaacgcattgctgaaaacgcttgaagagccaccagcagagacgtgg
tttttccttgctacccgcgagccagaacgtttactggcaacattacgtagtcgttgtcgg
ttacattaccttgcgccgccgccggaacagtacgccgtgacctggctttcacgcgaagtg
acaatgtcacaggatgcactacttgccgcattgcgcttaagcgccggttcgcctggggcg
gtactggcgttgtttcagggagataactggcaggctcgtgaaacattgtgtcaggcgctg
gcatatagcgtgcaatcgggcgactggtattcgctgctagcggcccttaatcatgaacaa
gctccggcacgtttacactggctggcaacgttgctgatggatgcgctaaaacgccatcat
ggcgctgcgcaggtgaccaatgttgatgtgccgggcctggtcgtcgaactggcaaaccat
ctttctccctcgcgcctgcaggctatactgggggatgtttgccacattcgtgaacagtta
atgtctgtcacaggcatcaaccgcgagcttctcatcaccgatcttttactgcgtattgag
cattacctgcaaccgggcgttgtgctaccggttcctcatctttaa
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