Escherichia coli O81 ED1a (commensal): ECED1_1257
Help
Entry
ECED1_1257 CDS
T00827
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ecq
Escherichia coli O81 ED1a (commensal)
Pathway
ecq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ecq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ECED1_1257 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecq03400
]
ECED1_1257 (mfd)
Enzymes [BR:
ecq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ECED1_1257 (mfd)
DNA repair and recombination proteins [BR:
ecq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ECED1_1257 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CAR07458
UniProt:
B7MTP4
LinkDB
All DBs
Position
complement(1256515..1259961)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS
QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH
SFLHGHALAMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY
RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD
PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLINTGDLENSAERFQADTL
ARFENRGVDPMRPLLPPQSIWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD
LAIQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD
RGRYLMIGAAEHGFVDTMRNLALICESDLLGERVARRRQDSRRAINPDTLIRNLAELHIG
QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF
KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVDLRMPSLLPDDFIPDV
NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG
NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR
ELEENAIA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaatatcgttatacgctgcccgtcaaagcgggtgagcagcgtctgctgggc
gagttaaccggcgctgcctgcgcgacgctggtagcggaaattgccgaacgtcacgccggt
ccggtggtactcattgcaccagatatgcaaaatgctctgcgtttgcatgatgaaatcagc
cagttcaccgatcagatggtgatgaatctggcggactgggaaaccctcccttacgacagt
ttttcgcctcatcaggacattatctcctcgcgtctttccaccctttaccagctaccgacc
atgcagcgtggcgtactgattgttccggtgaatacgcttatgcagcgcgtttgcccgcac
agctttctccacggtcatgcgctggcgatgaaaaaaggtcagcgcctgtcacgagatgca
ttacgaacccaactggacagcgccggttatcgccatgttgaccaggtgatggagcacggc
gaatacgccactcgcggcgcgttgctggatctcttcccgatggggagtgagctgccttat
cgtcttgatttctttgatgatgaaatcgacagcctgcgggtgtttgacgtcgatagccag
cgcacgctggaggaagtagaagcgatcaatctgctgcccgcgcacgaatttccgactgat
aaagcggcaattgaactgttccgcagccagtggcgcgataccttcgaagtgaagcgcgat
ccggaacatatttaccagcaagtgagtaaaggcacattacctgccgggatcgagtactgg
cagccgctattcttcagcgaaccgctgccgccactgttcagttatttccctgccaatacg
ctgctgataaatactggcgatctggaaaacagtgccgaacgtttccaggctgacacgctc
gcgcgttttgagaatcgcggtgtcgacccaatgcgcccactgttgccaccacaatcgatc
tggctacgggtagacgagctcttttcagagctgaaaaactggccgcgtgtgcagctaaaa
actgaacatttaccgacaaaagccgcgaatgccaatttaggtttccagaaactgccagac
ctggccattcaggcacaacaaaaagcgccgctggatgcgctgcgtaagttcctcgagact
ttcgacggtccggtggtgttctcggtagaaagtgaaggtcgccgtgaagcgctgggtgaa
ctgctcgcgcgaattaaaattgctccgcaacgcattatgcgtcttgatgaagccagcgac
cgtgggcgttatctgatgattggcgctgccgaacatggttttgtcgatacgatgcgtaac
ctggcgctgatttgcgaaagcgatctgctcggtgaacgcgttgcccgtcgtcgtcaggat
tctcgccgcgccatcaaccccgatacactgatccgtaaccttgcggagctgcatattggt
cagccggtggtccatctggagcacggcgtcggtcgttatgccggaatgaccacgctcgaa
gctggaggcattactggcgagtatttgatgctcacctatgccaacgacgccaaactgtat
gttccggtgtcgtcactgcatctgattagccgttacgcgggtggcgcagaagaaaacgca
ccactgcataaacttggtggcgatgcctggtcacgcgcacggcagaaagcggcggaaaaa
gtgcgtgatgtggcggcggaattgctggatatctacgcgcaacgcgccgccaaagagggc
ttcgcgtttaaacacgatcgtgagcagtatcagttattctgcgacagcttcccgtttgaa
accacgccggatcaggctcaagccattaatgcggtgcttagcgacatgtgtcagccgctg
gcaatggatcgtctggtgtgcggcgatgttggctttggtaaaacagaagtggcgatgcgc
gccgctttcctggcggtagataaccacaaacaggtggcggtgctggtgcctaccaccctt
ctcgcgcagcagcattacgacaacttccgcgaccgtttcgccaactggccggtacgtatc
gaaatgatctcccgtttccgcagcgccaaagagcagacgcaaatccttgcggaagtggcg
gaagggaaaatcgatattctgatcggtacgcacaaactgctgcaaagtgacgtcaagttt
aaagatttaggcctgctgattgtcgatgaagaacaccgcttcggggtgcgtcataaagag
cgcattaaagcgatgcgcgcgaacgtggatattctgacgcttaccgcaacgccgatccca
cgtacgctgaatatggcaatgagcggaatgcgcgatctgtcgattatcgccacgccgccc
gcccgtcgtctggcagttaaaacctttgtccgtgagtatgacagtctggtggtccgggag
gcgatcctgcgtgaaattttgcgcggaggacaggtttattatctctacaatgatgtggaa
aacatccagaaagccgccgaacggctggcagaactggtacctgaagcgcggattgccatc
ggtcacgggcaaatgcgtgagcgcgaactggaacgggtgatgaatgatttccatcatcaa
cgtttcaacgtgctggtttgtaccaccattatcgaaaccgggatcgacattcctaccgcc
aacaccattatcattgaacgcgcggatcacttcggtctggcacagttgcaccagttgcgc
ggtcgcgtcgggcgttctcaccaccaggcatatgcatggctactgacgccgcatccaaaa
gcgatgactaccgatgcgcaaaaacgtcttgaagcgattgcctcgctggaagatctcggt
gcaggttttgcgctggcaacgcacgatctggagatccgcggcgcaggtgaactgcttggc
gaagaacaaagcggctcaatggaaaccatcggtttctcgctgtatatggagttgctggaa
aacgccgtcgatgcgctgaaagccggacgcgagccgtcgctggaagatctcaccagccag
caaacagaagtcgacctgcggatgccgtcgctattgccagatgatttcatccctgacgtg
aacacgcgtctgtcgttctacaaacgtattgccagcgccaaaacggaaaacgaactggaa
gagatcaaagtcgagcttatcgatcgcttcggcctgctgccggatccggcgcgtaccctg
ctggatattgcccgtctgcgccagcaagcgcagaaactggggatcaggaagctggaaggt
aatgagaaaggcggcgtgatcgaatttgccgagaagaatcacgttaatccagcctggttg
attggtttgctgcaaaaacagccgcagcattaccgccttgatggtccgacgcgtctgaag
tttattcaggatttgagcgagcggaaaacgcgtatcgaatgggtacgccagtttatgcgt
gaactggaagagaacgcgatcgcttga
DBGET
integrated database retrieval system
