Escherichia coli O81 ED1a (commensal): ECED1_4964
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Entry
ECED1_4964 CDS
T00827
Symbol
rnr
Name
(GenBank) exoribonuclease R, RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ecq
Escherichia coli O81 ED1a (commensal)
Pathway
ecq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECED1_4964 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecq03019
]
ECED1_4964 (rnr)
03016 Transfer RNA biogenesis [BR:
ecq03016
]
ECED1_4964 (rnr)
Enzymes [BR:
ecq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ECED1_4964 (rnr)
Messenger RNA biogenesis [BR:
ecq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ECED1_4964 (rnr)
Transfer RNA biogenesis [BR:
ecq03016
]
Prokaryotic type
tRNA degradation factors
ECED1_4964 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
CAR10922
UniProt:
B7MSJ7
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All DBs
Position
4924428..4926869
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AA seq
813 aa
AA seq
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MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAAELHIEGEEQLEGLRRRLR
AMERDGQLVFTRRQCYALPERLDLVKGIVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP
DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA
VEQQVAGLKEEVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG
GYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMLDQVGNVFKGVISSVTGFGFF
VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKPKPKAA
KKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttccaggaacgcgaagctgaaaaatacgcgaatcccatccctagt
cgggaatttatcctcgaacatttaaccaaacgtgaaaaaccggccagccgtgatgagctg
gcggcagaactgcacattgaaggcgaagagcagcttgaaggcctgcgtcgccgcctgcgc
gcgatggagcgcgatggtcaactggtcttcactcgccgtcagtgctatgcgctgccggaa
cgcctcgacctggtgaaaggtatcgttattggccaccgtgatggctacggctttctgcga
gttgaagggcgtaaagatgatttgtatctctccagcgagcagatgaaaacctgcattcat
ggcgatcaggtgctggctcagccgctgggcgctgaccgtaaaggtcgtcgtgaagcgcgt
attgtccgcgtactggtgccaaaaaccagccagattgttggtcgctacttcaccgaagcg
ggcgtcggctttgtggttcctgacgatagccgtctgagcttcgatatcttaatcccgccc
gatcagatcatgggcgcgcggatgggctttgtggtggtggttgaactgactcaacgcccg
actcgccgtaccaaagcggtgggtaaaatcgtcgaagtgctgggcgacaatatgggcacc
ggcatggcggttgatatcgctctgcgtacccatgaaattccgtacatctggccgcaggct
gttgagcaacaggttgccgggctgaaagaagaagtgccggaagaagcaaaagtgggccgt
gtcgatctgcgcgatttaccgctggtcaccattgatggcgaagacgcccgtgactttgac
gatgcagtttactgtgagaaaaaacgcggcggcggctggcgtttatgggtcgcgattgcc
gacgtcagctactatgtgcgtccgccaacgccgctggacagagaagcgcgtaatcgtggt
acgtcggtgtacttcccttcgcaggttatcccgatgctgccggaagtgctctctaacggc
ctgtgctcgctcaacccgcaggtagaccgcctgtgtatggtgtgcgagatgacggtttcg
tcgaaaggccgcctgactggctacaaattctacgaagcggtgatgagttctcacgcgcgt
ctgacctacaccaaagtctggcatatactgcaaggcgatcaggatctgcgcgagcagtat
gcgccgctggttaagcatctcgaagagttacataacctctataaagtgctggataaagcc
cgtgaagaacgcggtgggatctcatttgagagcgaagaagcgaagttcattttcaacgct
gaacgccgtattgaacgtatcgaacagactcagcgtaacgacgcccacaagttaattgaa
gagtgcatgattctggcgaatatctcggcggcgcgtttcgttgagaaagccaaagaaccg
gcactgttccgtattcacgacaagccgagcaccgaagcgattacctctttccgttcagtg
ctggcggagctggggctggaactgccgggcggtaacaagccggaaccgcgcgactatgca
gagttactggaatcggttgccgatcgtcctgatgcagaaatgctgcaaaccatgcttttg
cgctcgatgaaacaggcgatttacgatccggaaaaccgtggtcacttcggtctggcattg
cagtcctatgcgcactttacttcgccgattcgtcgttatcctgacctgacgttgcaccgc
gccattaaatatctgctggcgaaagagcaggggcatcagggcaacaccactgaaaccggc
ggctaccattattcgatggaagagatgctgcaactgggtcagcactgttcgatggcggaa
cgtcgtgccgatgaagcaacgcgtgatgtgtctgactggctgaagtgtgacttcatgctc
gaccaggtaggtaacgtctttaaaggcgtaatttccagcgtcactggctttggcttcttc
gtccgtctggacgacttgttcattgatggtctggtccatgtctcttcgctggacaatgac
tactatcgctttgatcaggtagggcaacgcctgatgggtgaatccagcggccagacttat
cgcctgggcgatcgcgtggaagttcgcgttgaagcggttaatatggacgagcgcaaaatc
gactttagcctgatctccagcgaacgcgcaccgcgcaacgtcggtaaaacggcgcgcgag
aaagcgaaaaaaggcgatgcaggcaaaaaaggcggcaagcggcgtcaggtcggcaaaaag
gtcaactttgagccagacagcgcctttcgcggcgagaaaaaaccgaagccgaaagcagcg
aagaaagacgcgagaaaagcgaaaaagccatcggcgaaaacgcagaaaatagccgcagcg
accaaagcgaagcgtgcggcgaagaaaaaagtggcagagtga
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