Escherichia coli O8 IAI1 (commensal): ECIAI1_0396
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Entry
ECIAI1_0396 CDS
T00828
Symbol
sbcC
Name
(GenBank) exonuclease, dsDNA, ATP-dependent
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ecr
Escherichia coli O8 IAI1 (commensal)
Brite
KEGG Orthology (KO) [BR:
ecr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecr03400
]
ECIAI1_0396 (sbcC)
DNA repair and recombination proteins [BR:
ecr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ECIAI1_0396 (sbcC)
Archaeal homologous recombinant proteins
ECIAI1_0396 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
AAA_15
ABC_tran
cobW
nSTAND3
RsgA_GTPase
AAA_21
NTPase_1
AAA_22
AAA_14
GTP_EFTU
Motif
Other DBs
NCBI-ProteinID:
CAQ97268
LinkDB
All DBs
Position
complement(425209..428352)
Genome browser
AA seq
1047 aa
AA seq
DB search
MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR
LSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNRARNQPDGNLQVPRVELARCA
DGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTE
IYGQISAMVFEQHKSARTELEKLQAQASGVALLTPEQVQSLTASLQVLTDEEKQLLTAQQ
QEQQSLNWLTRLDELQQEASRRQQALQQALAEEEKAQPQLAALSLAQPARNLRPHWERIA
EHSAALAHTRQQIEEVNTRLQSTMALRASIRHHAAKQSAELQQQQQSLNTWLQEHDRFRQ
WNNELAGWRAQFSQQTSDREHLRQWQQQLTHAEQKLNALAAITLTLTADEVATALAQHAE
QRPLRQHLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADV
KTICEQEARIKTLEAQRAQLQAGQPCPLCGSTSHPAVEAYQALEPGVNQSRLLALENEVK
KLGEEGAALRGQLDALTKQLQRDENEAQSLRQDEQALTQQWQAVTASLNITLQPQDDIQP
WLDAQDEHERQLRLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQE
DEEESWLATRQQEAQSWQQRQNELTALQNRIQQLTPILETLPQSDDLPHSEETVALDNWR
QVHEQCLALHSQQQTLQQQDVLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLT
QLEQLKQNLENQRRQAQTLVTQTAETLAQHQQHRPDGLALTVTVEQIQQELAQTHQKLRE
NTTSQGEIRQQLKQDADNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKFRKFAQG
LTLDNLVHLANQQLTRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRTLSGGESFLVSL
ALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMK
ERIPVQIKVKKINGLGYSKLESTFAVK
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattctcagcctgcgcctgaaaaacctgaactcattaaaaggcgaatggaagatt
gatttcacccgcgagccgttcgccagcaacgggctgtttgccattaccggcccaaccggt
gcggggaaaaccaccctgctggacgccatttgtctggcgctgtatcacgaaactccgcgt
ctctctaacgtttcacaatcgcaaaatgatctcatgacccgcgataccgctgaatgtctg
gcggaggtggagtttgaagtgaaaggtgaagcgtaccgtgcattctggagccagaatcgg
gcgcgtaaccaacccgacggtaatttgcaggtgccacgcgttgagctggcgcgctgcgcc
gacggcaaaattctcgccgacaaagtgaaagataagctagaactgacagcaacgttaacc
gggctggattacgggcgcttcacccgttcgatgctgctttcgcaggggcaatttgctgcc
ttcctgaatgccaaacccaaagaacgcgcggaattgctcgaggagttaaccggcactgaa
atctacgggcaaatctcggcgatggtttttgagcagcacaaatcggcccgcactgagctg
gagaagctgcaagcgcaggccagcggcgtcgcgttgctcacgccggaacaagtgcaatcg
ctgacagcgagtttgcaggtacttactgacgaagaaaaacagttacttaccgcgcagcag
caagaacaacaatcactaaactggttaacgcgtctggacgaattgcagcaagaagccagc
cgccgtcagcaggccttgcaacaggcgttagccgaagaagaaaaagcgcaacctcaactg
gcggcgctcagtctggcacaaccggcacgaaatcttcgtccgcactgggaacgcatcgca
gaacacagcgcggcgctggcgcatactcgccagcagattgaagaagtaaatactcgctta
cagagcacaatggcgcttcgcgcgagcattcgccaccacgcggcgaagcagtcagcagaa
ttacagcagcagcaacaaagcctgaatacctggttacaggaacacgaccgcttccgtcag
tggaacaacgaactggcgggttggcgtgcgcagttctcccaacaaaccagcgatcgcgag
catctgcggcaatggcagcaacagttaacccatgctgagcaaaaacttaatgcgcttgcg
gcgatcacgttgacgttaaccgccgatgaagttgctaccgccctggcgcaacatgctgag
caacgcccactgcgtcagcacctggtcgcgctacatggacagattgttccccaacaaaaa
cgtctggcgcagttacaggtcgctatccagaatgtcacgcaagaacagacgcaacgtaac
gccgcacttaacgaaatgcgccagcgttataaagaaaagacgcagcaacttgccgatgtg
aaaaccatttgcgagcaggaagcgcgcatcaaaacgctggaagctcaacgtgcacagtta
caggcgggtcagccttgtccactttgtggttccaccagccacccggcggtcgaggcgtat
caggcgctggagcctggtgttaatcagtctcgattactggcgctggaaaacgaagttaaa
aagctcggcgaagaaggtgcggcgctgcgcgggcaactggacgccttaacaaagcagctt
cagcgcgatgaaaacgaagcgcaaagcctccgacaagatgagcaagcacttactcaacaa
tggcaagccgtcacggccagcctcaatatcaccttgcagccacaggacgatattcaaccg
tggctggatgcacaagatgagcacgaacgccagctgcggttactcagccaacgacatgaa
ttacaagggcagattgccgcgcataatcagcaaattatccagtatcaacagcaaattgaa
caacgccagcagcagctcttaacggcattggcgggttatgcactgacattgccacaggaa
gatgaagaagagagctggttggcgacacgtcagcaagaagcgcagagctggcagcaacgc
cagaacgaattaaccgcgctgcaaaaccgtattcagcagctgacgccgattctggaaacg
ttgccgcaaagtgatgatctcccgcacagcgaagaaactgtggcgctggataactggcgg
caggttcatgaacaatgtctcgcattacacagccagcagcagacgttacagcaacaggat
gttctggcggcgcaaagtctgcaaaaagcccaggcgcagtttgacaccgcgctacaggcc
agcgtctttgacgatcagcaggcgttccttgcggcgctaatggatgaacaaacactaacg
cagctggaacagctcaagcagaatctggaaaaccagcgccgtcaggcgcaaacgctggtc
actcagacagcagaaacgctggcacagcatcaacaacaccgacctgacgggttggctctc
actgtgacggtggagcagattcagcaagagttagcgcaaactcaccaaaagttgcgtgaa
aacaccacgagtcaaggcgagattcgccagcagctgaagcaggatgcagataaccgtcag
caacaacaaaccttaatgcagcaaattgctcaaatgacgcagcaggttgaggactgggga
tatctgaattcgctaataggttccaaagagggcgataaattccgcaagtttgcccagggg
ctgacgctggataatttagtccatctcgctaatcagcaacttacccggctgcacgggcgc
tatctgttacagcgcaaagccagcgaggcgctggaagtcgaggttgttgatacctggcag
gcagatgcggtacgcgatacccgtaccctttccggcggcgaaagtttcctcgttagtctg
gcgctggcgctggcgctttcggatctggtcagccataaaacacgtattgactcgctgttc
cttgatgaaggttttggcacgctggatagcgaaacgctggataccgcccttgatgcgctg
gatgccctgaacgccagtggcaaaaccatcggtgtgattagccacgtagaagcgatgaaa
gagcgtattccggtgcagatcaaagtgaaaaagatcaacggcctaggctacagcaaactg
gaaagtacgtttgcagtgaaataa
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