Escherichia coli O8 IAI1 (commensal): ECIAI1_3011
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Entry
ECIAI1_3011 CDS
T00828
Symbol
recJ
Name
(GenBank) ssDNA exonuclease, 5'--> 3'-specific
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ecr
Escherichia coli O8 IAI1 (commensal)
Pathway
ecr03410
Base excision repair
ecr03430
Mismatch repair
ecr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ecr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ECIAI1_3011 (recJ)
03430 Mismatch repair
ECIAI1_3011 (recJ)
03440 Homologous recombination
ECIAI1_3011 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecr03400
]
ECIAI1_3011 (recJ)
DNA repair and recombination proteins [BR:
ecr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
ECIAI1_3011 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
ECIAI1_3011 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ECIAI1_3011 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
PEP-utilizers
Motif
Other DBs
NCBI-ProteinID:
CAQ99826
LinkDB
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Position
complement(3094448..3096181)
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AA seq
577 aa
AA seq
DB search
MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKA
VEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPE
VVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLR
DCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPL
DANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDM
SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP
GMMLKFGGHAMAAGLSLEEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTME
VAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTA
LWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacaacagatacaacttcgtcgccgtgaagtcgatgaaacggcagacttgcccgct
gaattgcctcccttgctgcgccgtttatacgccagccggggcgtgcgcagtgcgcaagaa
ctggaacgcagtgttaaaggtatgttgccctggcagcaactgagcggcgtcgaaaaggcc
gttgagatcctttacaacgcttttcgcgaaggaacgcggattattgtggtcggcgatttt
gacgccgacggcgcgaccagcacggctctaagcgtgctggcgatgcgctcgcttggttgc
agcaatatcgactacctggtaccaaaccgtttcgaagacggttacggcttaagcccggaa
gtggtcgatcaggcccatgcccgtggcgcgcagttaattgtcacggtggataacggtatt
tcctcccatgcgggggttgaacacgctcgctcgttgggcattccggttattgttaccgat
caccatttgccaggcgaaacattacccgcggcggaagcgatcattaaccctaacttgcgc
gactgtaatttcccgtcgaaatcactggcaggcgtgggtgtggcgttttatctgatgctg
gcgctgcgcacctttttgcgcgatcagggctggtttgatgagcgtggcatcgcaattcct
aacctggcagaactgctggatctggtagcgctggggacagtagcggacgtcgtgccgctg
gacgctaataatcgcattctgacctggcaggggatgagtcgcatccgtgccggaaagtgc
cgtccggggattaaagcgctgctggaagtggcaaatcgcgatgcgcaaaaactcgccgcc
agcgatttaggttttgcgctggggccacgtctcaatgctgccgggcgactggacgatatg
tccgtcggtgtggcgctgttgctgtgcgacaacatcggcgaagcgcgcgtgctggcaaat
gaactcgatgcgctaaaccagacgcgaaaagagatcgaacaaggaatgcaagttgaagcc
ctgaccctgtgcgagaaactggagcgaagtcgcgacacgctacccggcgggctggcaatg
tatcaccccgaatggcatcagggcgttgtcggtattctggcttcgcgcatcaaagagcgt
tttcaccgtccggttatcgcctttgcgccagcaggtgatggtacgctgaaaggttccggt
cgctccattcaggggctgcatatgcgtgatgcactggagcgattagacacactctaccct
ggcatgatgctgaagtttggcggtcatgcgatggcggcgggtttgtcgctggaagaggat
aaattcgaactctttcaacaacggtttggcgaactggttactgagtggctggacccttcg
ctattgcaaggcgaagtggtgtcagacggtccgttaagcccggccgaaatgaccatggaa
gtggcgcagctgctgcgcgatgctggcccgtgggggcagatgttcccggagccgctgttt
gacggtcatttccgtctgctgcaacagcggctggtgggcgaacgtcatttgaaggtgatg
gtcgaaccggtcggcggcggtccactgctggatggtattgcttttaatgtcgataccgct
ctctggccggataacggcgtgcgcgaagtgcaactggcttacaagctcgatatcaacgag
tttcgcggcaaccgcagcctgcaaattatcatcgacaatatctggccaatttag
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