Etheostoma cragini (Arkansas darter): 117934696
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Entry
117934696 CDS
T07493
Symbol
acin1b
Name
(RefSeq) apoptotic chromatin condensation inducer 1b isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03013
Nucleocytoplasmic transport
ecra03015
mRNA surveillance pathway
ecra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117934696 (acin1b)
09122 Translation
03013 Nucleocytoplasmic transport
117934696 (acin1b)
03015 mRNA surveillance pathway
117934696 (acin1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117934696 (acin1b)
03041 Spliceosome [BR:
ecra03041
]
117934696 (acin1b)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117934696 (acin1b)
Spliceosome [BR:
ecra03041
]
Complex C
Other components
EJC/TREX
117934696 (acin1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
117934696
NCBI-ProteinID:
XP_034712457
LinkDB
All DBs
Position
19:6130299..6154300
Genome browser
AA seq
1231 aa
AA seq
DB search
MADEDITLDGKPLQSLRVADLKAALEQRNLPKSGQKNTLLKRLKGALMLENLQKSSSSHS
GLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEREAQQEEESDESPAVPEEDEDHSEDN
DSSSYVPDKTDFINFAQKHRSLPPTPSMTRAEEKGGSDAMMGHGMMACGPDMGPVPTLQP
QESIEVPGARMQRATFHQGHKEPPAPSPPRAVASLSVRVLGQPDRQGLPPAVSRAQEKEG
TAPIEPGSAHPVLHLSRSARASAGGQVHEDSADDDDGEDESENDEDWGPGPGVAPRGNRV
PPQPQQMPPSVPSTAARSKRKLQPPQHIPPPQVHHTPMQLRHPTPPPSPPPDLFPLPDTP
KQSPPDTDDQEGEGSEASRGPRVLPFPSSTMQRQDSESSSRSSSPEPSAERRPGPLSLLV
HKMESEGAFHAAEATSAVDMSAETAHSTAGSGSSIESPLLRLDRKRLLENREMEEERQLK
EEKEREQRQKQEKERKKIQEQERQKKRLEEEKEKERKQLEEDEKQRLKEEREKERKHQEE
KKDRKSLVEEKTREEKPLKEKVKRQETANKGRVAVTEARDSGSSSDSDSKSDSSSRSSQS
SSSSGDTTSHAMLKKADQGQEAEDEKKTNLSKGAEKRYLSKREVSEPSAAAVTEVEPESE
SSMAQQPPSGAEPENSEGPLEESTTPKAFAARKISLTSSKTSPATTDGGAGEPEMGTAAG
RKRRWGSSTAVTAKKPSIIITTDSLKSLIPDIKVNQEAVVELHPEELQMSGDEECLDTSR
GDQDKGLKIRRTVTQVVPGDQENGQTNEEEEVDKTEKEKQRRPSRDKRKNSVSEEASETK
TSVKLEGEAKKVTPSDSLVRRSISQQKSGVSVTIDDPIRATRQPSPPHGKVSNIIHVTNL
VRPFTLGQLKELLMRTGSMVEEGFWIDKIKSHCYVTYSTTEEAVATRAALHGFKWPPSNP
KVLCVDFCEQDELDVHKGILKLKREEDHVALPGGPQNRLPPLMPEGDRNRDRDRDRDLER
DRGVVGVRDLWAEREREMERRERARGEREWDRDKVREFARPGEDGQRSRSRDRERRRRER
AKSKEKKTDKKAEKGDEPPVKLLDDLFLKTKAAPCIYWLPLSEEQAAQRLLDRTERQKER
ERRRKEQQEEEEKKREEEKKERLKGREKDTSVVVSAGAAPRGADRDRERDRGRDREGDKK
RDNNYRPRRPSVGAGSGRRSRSRSNPRDRRR
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaagatattacgcttgatggaaaacctctacaatcgcttagagtcgcggat
ttgaaagctgctttggagcaaagaaaccttcccaagagtggacagaaaaacacactcttg
aaacgactgaaaggggctctgatgctggaaaatctccagaagtcatcctcctctcacagt
gggctgcagcccaactcacagataggagaggagatgagccagaatagcttcataaaacag
tacttggctaaacagcaggagcttcttcgccagagactggagagagaagcccagcaagag
gaagagtcagatgaaagcccagcagtgccagaggaggatgaagaccactcggaggacaat
gacagttcttcctatgtccctgacaagactgacttcattaattttgcccagaagcatcgc
tccctaccccccacgccctcaatgaccagggcggaggagaaaggaggaagtgatgcaatg
atgggtcatgggatgatggcatgcggacctgacatgggccccgttcctaccctccaaccc
caggagtccattgaggttccaggagctaggatgcagcgagccacctttcatcaagggcat
aaggagccaccagccccatctcctccacgtgccgtagcttccttgtcagtgcgcgtcctg
ggccagcctgaccgccaggggctgccccctgccgtatctcgagcccaggagaaggagggc
actgcaccgattgaaccaggatcagctcatcctgtcctccatcttagccgttctgctagg
gcctcagcaggaggtcaagtccatgaggacagtgctgacgatgatgacggtgaggacgag
agcgagaatgatgaggactgggggcctggtccaggtgtggcaccaaggggcaacagagta
cctccccagccgcagcagatgcctcccagtgtcccatcaacagctgccagatccaaacgc
aagcttcagcctccccagcacatcccaccaccacaggtacaccacacaccaatgcaactg
cgccaccccactcctcctccctctcccccccctgacctgtttcccctacctgacactccc
aaacagagcccaccagacacagacgaccaagagggagaaggctctgaggcttcacgtggt
ccgagggtgctgccattcccatcttccaccatgcagaggcaagactctgagtcaagctct
cgttccagcagccctgagccctctgcggagcgcaggccagggcctctttctctgctcgta
cacaagatggagtcagagggggccttccatgcagcagaggccacctctgctgtggatatg
tcagcagagacagcacactccactgctgggtctggcagttccattgaatctccactgcta
agattggacagaaagaggctactagaaaacagagagatggaggaagaaaggcaactgaag
gaggaaaaagagagagaacaacgccagaagcaggagaaagaaagaaagaagatacaagaa
caggagcgacagaagaaacgcttggaagaagagaaggaaaaagagaggaaacaactggaa
gaggatgagaaacagcgtctgaaagaggagcgagaaaaagagagaaaacaccaggaagaa
aaaaaagatagaaaaagcctggtcgaggagaagacaagagaggaaaaaccgctgaaggag
aaggtaaagagacaggagacagcaaacaaaggcagggtggctgtaactgaggcccgagac
tcaggttcctcatcagattctgactccaaatcagactcctcttcacgctcatcacaatcc
tcttcctcctccggggatacaaccagccatgccatgctgaagaaggcagaccaaggacaa
gaagcagaggatgagaaaaagactaacctgagtaaaggggcagagaaacgatacctttca
aaaagggaggtgtcagagcccagcgcagctgccgtcaccgaggtggaaccagagtctgag
agctccatggcccagcagccaccttctggggctgagccagagaacagcgagggccctctg
gaggagagcaccactcctaaggcttttgctgctcgcaagatatccttgacaagcagtaag
acgtctcctgccaccacagatggaggagcaggtgagcccgagatgggaactgcagcaggg
aggaagaggcgatggggctccagcacagcagtcactgctaagaaaccatccatcatcatc
accactgactcactgaagtcattgattccagacatcaaagtgaaccaggaggcagtggtg
gagctgcacccagaggaactgcaaatgtctggggacgaggagtgtctggacaccagccgg
ggcgaccaggacaaaggcctgaagattcgacgaaccgtcacacaggttgttccaggtgac
caggaaaacggacagacaaatgaagaggaagaagtggataaaactgagaaagaaaaacaa
cgtaggccctctagagacaaaaggaagaacagcgtttctgaggaagcctctgaaacaaag
acatctgtcaagcttgaaggagaggcaaagaaagttacccccagcgacagtctggtgcgt
cgctccataagtcaacagaagtctggcgtgtccgtcactatcgatgaccccatccgcgca
accaggcagccctcgccgcctcacggcaaagtctcaaatatcatccatgtgaccaacctg
gtgcggcccttcaccctaggccaacttaaagagctgctgatgaggacgggcagcatggtg
gaagagggcttctggattgacaaaatcaagtctcattgctatgtcacatactctacaaca
gaggaggctgtcgccaccagagctgccctccacggattcaaatggcctccaagcaatccc
aaggtcctctgtgtcgatttctgtgagcaggatgagctggatgttcacaaaggcatcctg
aagctaaaaagggaggaggaccatgttgccctgccaggtggtcctcaaaaccggctgccc
cctctgatgcctgagggagacaggaacagagaccgagacagggacagagatctagaacgg
gaccgtggcgtggtcggagtgcgggatctgtgggcggagcgggagagagaaatggagcgt
cgtgaacgagcccggggcgagcgggaatgggaccgggataaagtccgggaatttgccagg
ccgggagaggacggacagcgttctcgatccagagacagagagaggaggaggagggagagg
gccaagagcaaggagaagaagactgataagaaggcagagaaaggagatgagcctcctgta
aaactgctagacgacttgttcctgaagaccaaagctgctccatgtatatactggcttccc
ctctctgaggagcaggcggcacagaggctgttggaccgcacagagcggcaaaaggagcgt
gaacggaggcgcaaggagcagcaagaggaggaggagaagaagcgagaagaggaaaagaaa
gagcggctgaagggtcgggagaaggacaccagcgtggtagtgagcgctggagcagccccg
cgaggagctgacagagaccgagagagggaccgcggccgagacagagagggggacaagaag
agggacaacaactaccggcccagacgaccctctgtaggcgctggcagtggacgccgctct
cgcagccgtagcaacccaagagatagacgccgctga
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