Etheostoma cragini (Arkansas darter): 117935001
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Entry
117935001 CDS
T07493
Symbol
si:cabz01101003.1
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase CYLD
KO
K08601
ubiquitin carboxyl-terminal hydrolase CYLD [EC:
3.4.19.12
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04217
Necroptosis
ecra04622
RIG-I-like receptor signaling pathway
ecra04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
117935001 (si:cabz01101003.1)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
117935001 (si:cabz01101003.1)
04625 C-type lectin receptor signaling pathway
117935001 (si:cabz01101003.1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ecra01002
]
117935001 (si:cabz01101003.1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecra04121
]
117935001 (si:cabz01101003.1)
Enzymes [BR:
ecra01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
117935001 (si:cabz01101003.1)
Peptidases and inhibitors [BR:
ecra01002
]
Cysteine peptidases
Family C67
117935001 (si:cabz01101003.1)
Ubiquitin system [BR:
ecra04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
117935001 (si:cabz01101003.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAP_GLY
UCH
EAD8
Motif
Other DBs
NCBI-GeneID:
117935001
NCBI-ProteinID:
XP_034712974
LinkDB
All DBs
Position
19:4299100..4309935
Genome browser
AA seq
964 aa
AA seq
DB search
MSGVHEQTRKRRHPKMFLISRDMDVQDDLEGTIRLLRGYICLEQDSGKNRGDSPWVKVLD
NGIMLKIERKFLLEVPTDLNGLLEPVSDPEARLRLLNNPGKLQHFATLPIDYPLWVEIGQ
REELAEADLKYIGPLTRGSSAVLFGVQLKGSAVGRGMGNGSFKGHRLFTCPEACALFVPV
SHIRLRHWTSDRGSDANEQHRERVHRSNGQQSNNDRHPHQQQHSRHISFHQHGPSSPHQP
HASGIVPRTAESAVLTAKNQVQVRGPASPPPFHVGQRVCFPLENNVYGGEVRFCGLLPGR
SSSGMYVGVLLDAPVGNWDGLCKGEKLCHIPSPLYGLLLPITKVSPETKSNSHSPPHQIT
KSILKPALPPVTKPGPVSPSTSAPKVALMPPCKQALKPPPLPPPKPTQMALSHPPLPPPI
PRSPTSPTATNHLQHLNNNIPNPPNGVAAEETGEAGPEGELEVGSMVEVNNPPLFGVIHW
IGRISGISEPVAGIELDQELSAGTDGSYLGERHFRCPANKGLFVKLRNCRRDSRFPAPEA
PVNQVERCNSIAFAEWGSERVEDNTPPVEGDEASELYQGWKRGIQGHLNSCYLDATLFSL
FSCCSSADWVLFWPSDPETDKNSSQAQDLLRCEIVNPLRRYGYVCASKTMALRRLLEAAN
RDTGFTNQEKDPEEFLNKLFQLLRVEPLLKIRSMTQRPQECHLYQLFPPTLPPSSPSTVS
PVDSPIPLTLPSPSRMRVASVQQLLESSFLHAGLKFVETPSCLLLLMPRFGKEFKMFDAI
LPTLSLDITDLLDDTLRQCSICQAVAEWECLQCYEDPDITPGHLKQYCQTCNTQVHSHKK
RASHSPVKIAVPGGSWTGPLHCTRRRMSLFAVTCIETSHYVSFVKHGPLPTDWLFFDSMA
DREGGENGFNIPRVKACPEVGRYLSLSEDELSRVESISLRESARRLLCDSYMCLYHSPEL
SLYK
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggggtccacgagcaaaccaggaagcgccgccacccaaaaatgttcttaatctcg
agagacatggacgtccaggacgatctggaaggtaccattcggctgctgcgggggtacata
tgcctggagcaagattcgggcaagaacagaggtgactccccttgggtcaaggtgttagac
aatggcatcatgttaaaaatagaaaggaagttcctgcttgaagtcccgactgaccttaac
ggccttttggagcctgtatctgatccggaggctcgcctaagacttctaaacaatccaggg
aagctgcagcattttgctactttgcctattgattatccgttgtgggtcgaaataggccaa
cgtgaagagcttgcggaggcagatcttaaatacattggaccgctcaccagagggagcagc
gctgtgctatttggggtacagcttaagggttcagcagtaggtagaggaatgggcaacggt
tcctttaagggccaccgtctcttcacctgccccgaagcctgcgccctcttcgtcccggtc
agccacatcaggcttcgccactggactagcgaccgtggctctgacgcaaacgagcaacac
cgtgagcgagtccaccgcagcaacgggcagcagagcaacaatgaccgccatcctcatcag
cagcagcacagtcgtcacattagtttccaccagcatggtcccagcagccctcatcagccg
cacgcttcgggcatcgtccctcggacagcggagtcagcggtcctcacggctaaaaaccag
gtgcaggtccgaggccctgcgtcgccgccaccgttccacgttggccagcgggtgtgtttt
cccctggaaaacaatgtctatggaggggaagtgcgcttctgtggtctcttgcccggccgg
tcctcgtcagggatgtacgtcggagtcctgctggacgctcctgttggcaactgggacggg
ctctgtaagggagagaagctctgccacattccctcccctctctatggactacttctgcca
atcaccaaggtttccccagagacgaaatccaacagtcacagcccgccacaccaaattacc
aaatccatcctgaagccagcactgccccccgtcactaagccaggccccgtgtccccatct
acctctgctcccaaggttgccctgatgcccccctgcaaacaagcacttaaacctccacca
ctgccgccacccaagcccacccaaatggcgctgtctcatccccctcttccacctcccata
ccccgcagccctacgtcgccgaccgccaccaaccacctgcagcacctcaacaacaacata
cccaacccacccaacggtgtagctgcagaggagacgggggaagcaggaccggagggtgag
ctggaggtggggtcaatggttgaagtgaacaacccgcctctttttggggttattcactgg
attggacggatcagtgggatttcagagccagtagcaggaattgagctggaccaggagctg
tctgcaggcacagatggcagttacctcggtgaacgtcacttccgttgcccggccaacaag
gggctgtttgtcaagcttcgcaactgcagacgggactccaggtttcccgcccctgaggca
cccgtcaatcaagtggagcgatgcaactctatagcctttgcagagtggggcagtgagcgt
gtggaggataacactcctcctgtggaaggggacgaggccagtgagctctaccagggctgg
aagagaggcatccagggtcacctcaactcctgctacctggacgctacgctgttcagtctg
ttctcctgctgcagctcagcagattgggtgttgttttggccctctgacccagaaactgac
aaaaactccagtcaggcccaggacctgttgcgttgtgagatagtcaaccccctgcgaagg
tatggctatgtgtgtgccagtaagaccatggccttaagacgacttctggaggctgcgaat
agagacacaggtttcaccaaccaggagaaagatccggaagagttcctcaacaagcttttc
cagctcctccgagtcgagccgctcctcaagatcagatccatgactcagcggcctcaggag
tgtcacctctaccaactcttcccacctacacttcctccttcctcgccgtcaaccgtctcg
ccagttgactcccccatccctctcaccttgccatcacccagtcggatgagggtcgccagc
gtccagcagctgctggagtcctccttcctccacgccggcctcaagtttgtcgagactccc
tcctgcctcttactgctcatgcctcggttcggaaaggagttcaaaatgtttgacgccatc
ttgcccaccctcagcctggacatcacagacctgctggacgacactctgagacagtgcagt
atctgtcaggctgtagcggagtgggagtgtctccagtgttatgaagacccagatattact
cccggtcatctcaaacaatactgccagacctgcaacacacaggtccacagtcacaagaag
cgggcgtcccacagcccggtgaagattgctgtccccgggggatcgtggaccggccctttg
cactgcacccgccgacgaatgtctctctttgccgtgacatgcattgaaaccagccattac
gtgagcttcgtcaaacacgggcccctccccaccgactggctgttctttgacagtatggca
gaccgggaaggtggcgagaacggcttcaacatcccccgcgtgaaggcgtgtccagaggtg
ggccgctacctcagcctctcagaagatgagttgagcagagttgagtccatctccttacgg
gaatccgcccgccgcctgctgtgtgactcctacatgtgtctgtaccacagccccgagctc
agcctgtacaagtga
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