Etheostoma cragini (Arkansas darter): 117935249
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Entry
117935249 CDS
T07493
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03020
RNA polymerase
ecra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117935249 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
117935249 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecra03021
]
117935249 (polr2a)
03400 DNA repair and recombination proteins [BR:
ecra03400
]
117935249 (polr2a)
Enzymes [BR:
ecra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117935249 (polr2a)
Transcription machinery [BR:
ecra03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
117935249 (polr2a)
DNA repair and recombination proteins [BR:
ecra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
117935249 (polr2a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
117935249
NCBI-ProteinID:
XP_034713274
LinkDB
All DBs
Position
19:complement(15696516..15707156)
Genome browser
AA seq
1610 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLVDSN
NPKIKDILIKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDLTKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDVILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINV
VRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DVTRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNVATLKPSHKAFEKKFKFDCTNERALRRMLQEDVVKDVLTNANVQSSLEKEFDKMKED
REVLRAIFPTGDSKVVLPCNLDRMIWNAQKIFRINTRTPTDLNPLRVVEGLQDLSKKLVI
VNGDDPLSRQAQQNATLLFNIHLRSTLCSKRMTQEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
NHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHAESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGTVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGEYMFWSLWLFHLFFPKYSPTSPTYSP
TSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPEDSDEENN
NT seq
4833 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcacgatcaagagagttcaa
ttcggcatcatcagcccagatgagcttaaacggatgtccgttacagaagggggaatcaaa
taccccgaaaccacagaaggaggacgtcctaaacttggtggccttatggacccaagacaa
ggggtcatagaacgaaccggaagatgccagacatgtgcaggcaacatgacagaatgccct
ggccactttgggcacatagaactggcaaagccagttttccatgttggcttcgtaacaaag
ataatgaaggttcttcgatgtgtctgcttcttttgctctaagctattagtggattcaaac
aatccaaagatcaaagacatcctgataaaatctaaagggcagcccaggaaacgtttgaca
catgtgtacgagctgtgcaaaggaaaaaatatctgtgaagggggcgaggagatggacaac
aaatttggaatggaacagcaggagactgaggaggaccttaccaaggagaagggccatggt
ggctgtggacgctaccagccacgtatcagacgctctggcttggagctgtatgccgagtgg
aagcacgttaatgaggattcacaggagaagaaaatcctgttgagccctgagcgtgtgcat
gagatcttcaagcgcatctcagatgaagaggacgtcatcttgggcatggaccccaagttt
gcccgaccagaatggatgattgtaactgttttgcctgtgcctccactggctgtcagacct
gctgtagtaatgcaaggctctgctcgcaaccaggatgacttgacccacaaactggctgac
atagtcaaaatcaacaaccagctgagaagaaacgagcagagtggtgctgcagctcacgtc
atagctgaggatgtcaaactgctccagtttcatgtagccaccatggtggacaacgaattg
ccaggcctgccaagggcaatgcaaaagtctggccgccctctcaaatccttaaagcagcgt
ctaaaggggaaggaggggcgagtccgaggtaaccttatgggcaagcgtgtggacttctcc
gcccgaactgtcatcaccccagaccccaacctgcaaatcgaccaagtgggcgtaccacga
tccattgcagccaatatgaccttcccagaaattgtcacaccctttaatattgacagatta
caagagctggtgcgaagaggcaacagccagtacccaggagccaaatacatcatccgtgac
aatggagacagaattgacctgcgattccaccctaaaccaagtgaccttcacctgcagatt
ggctacaaggtggaaagacatatgtgtgacggtgacatcatcatcttcaacagacagcct
acactacataaaatgtccatgatggggcacagggtgcgaattctgccgtggtccacgttt
cgactcaaccttagtgtcaccactccatacaatgctgactttgacggggatgagatgaac
ctccacctgccccagtccctcgagacgagggcagagattcaggagctggccatggtgccg
cgtatgatcgtcacaccccagtccaacaggcctgtcatgggtattgtgcaggacaccctc
acagctgtccgcaaattcaccaaacgagatgtctttttagagaggggtgaagtaatgaac
ctcctcatgttcctctccacttgggatggaaaagtgcctcagccagccatcctgaagccc
cgtcctctgtggacaggcaagcagatcttcagcctaatcattcctggacacattaatgtg
gtccgcacacacagcacccatcctgacgaagaagacagtggcccttacaaacacatctca
cctggggacaccaaggtcatagtggagaatggtgagttgatcatgggcatcctgtgtaag
aaatctctgggaacctcagccggctcccttgtccacatctcctacctggagatgggccac
gacgtcaccagactcttctactccaacattcagactgtggtcaacaactggctgctaatc
gagggtcattccattggtattggtgactccattgctgatgccaagacctaccttgacatc
cagaacaccatcaagaaagccaaacaggatgtgatagaagtcatcgagaaagcccacaac
aacgagctggagcctacccctggtaacacactgaggcagacctttgagaaccaggtgaat
cgtatcctcaacgatgctcgtgacaaaacaggatcctcagcccagaagtctctgtctgag
tacaacaacttcaagtccatggtggtggcaggttctaagggctcaaagattaacatctca
caggttattgctgtggtggggcagcagaacgtggaggggaaacgaattcccttcggcttc
aaacatcgcacgctgcctcacttcattaaggatgactacggtcctgagagtagaggcttt
gtggagaactcctacctggctggcctgactccaacagagttcttcttccatgccatggga
ggcagagagggtctgatcgacacagctgtcaagactgctgagactggttacatccagcgt
cgtctgatcaagtccatggagtcggtgatggttaagtatgacggcacggtgcgtaactcc
atcaaccaggtagttcagctgcgttacggtgaggatggcctggcaggagagaacgtcgag
ttccaaaacgtggcaacgctcaaaccctcgcacaaggcctttgaaaagaagtttaagttc
gattgtaccaatgagcgagcgcttaggcggatgctgcaggaagatgtagtaaaagacgtg
ctgacaaatgccaatgtgcagagttccttggagaaggagtttgacaagatgaaggaggac
agggaggtcctccgagccattttccccaccggggacagtaaggtggtgctgccatgcaac
ctggacagaatgatctggaacgctcagaagatcttccgcatcaacactcgaaccccaaca
gacctcaatcctctaagggtggtcgagggtctgcaggatctcagtaagaagctggtgatt
gtgaatggtgatgacccgctgagcagacaggcccagcagaacgccactctgctctttaac
atccacctgcgctccacactctgctccaaacgcatgacccaggaattccgcctttccacg
gaggctttcgactggctgctgggagagattgagaccaaattcaaccagtccattgcccac
ccaggtgaaatggttggcgctctggctgctcagtcgctgggagagccagccacccagatg
accctcaacaccttccactacgccggtgtgtcagccaagaacgtaacactcggtgtgcct
cgtctaaaagagttgatcaacatctccaagaggcccaaaacaccctctctgacggttttc
ctgctgggtcaggcagcgcgtgacgctgagagggccaaggacatcctctgtcgtctggag
cacaccacactgcgaaaggtgacggcaaacacagccatctactacgaccccaacccccag
aacacggtggtggccgaggaccaggagtgggtgaacgtctactacgagatgcctgacttt
gacgtgacgcgcatttcaccgtggctgctgcgcatcgagctcgaccgcaagcacatgact
gatcgcaagctgactatggagcagattgcagagaagatcaacgcaggttttggagatgac
ctgaactgtattttcaatgacgacaatgctgaaaagcttgttctgcgaatcagaatcatg
aacagcgatgagaacaagttccaggaggatgaggaggtggtggacaaaatggatgatgat
gtgttcttgaggtgcatcgagtccaacatgctgacagacatgaccctacaaggcattgag
cagattagcaaggtgtacatgcacttgcctcagactgacaataagaagaagatcatcatc
acagaggatggtgagttcaaggccctgcaggagtggatccttgagacagacggcgtgagc
ctcatgagggtcctcagcgagaaagacgtagatcctgtcaggaccacctccaacgacatt
gttgagatcttcacggtcttgggaattgaggcagtgcgaaaggctctggagagagagttg
aaccacgtcatctcttttgacggttcctatgtcaactaccgtcacttggctctgctctgt
gacaccatgacatgccgcggtcacctgatggccatcacacgtcacggcatcaaccgtcaa
gacacaggaccacttatgaagtgttcctttgaggagacggtggatgtgttgatggaggcg
tcatcccatgccgagagtgaccccatgaagggtgtgtcagagaacatcatgcttggccag
ctcgccccggctggtacaggatgctttgatttgctgttagatgctgagaagtgtaaatat
ggcatggagatccccacaaacatacctggcatcagcgtggctggacccactggaatgttc
tttggcacagtgccgagtcccatgagtggtatgtcacctgccatgaccccatggaacaca
ggagcaacaccggcctatggtgcctggtcccccagtgtcggtgagtatatgttctggtca
ctttggctcttccacctttttttccccaaatactcccccacctcccctacttactcgcca
acttcacccaagtactcacccacgtctcctacgtactccccaactagtcctaaaggctcc
acgtacagccccacctcccctggatacagccccacctcacccacctacagcccggccatc
agccccgaagacagcgacgaggagaacaattga
DBGET
integrated database retrieval system
