Etheostoma cragini (Arkansas darter): 117935370
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Entry
117935370 CDS
T07493
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03013
Nucleocytoplasmic transport
ecra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117935370 (srrm1)
03015 mRNA surveillance pathway
117935370 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117935370 (srrm1)
03041 Spliceosome [BR:
ecra03041
]
117935370 (srrm1)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117935370 (srrm1)
Spliceosome [BR:
ecra03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
117935370 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
117935370
NCBI-ProteinID:
XP_034713386
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Position
20:18157946..18171621
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AA seq
858 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLDKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVIEFIFNQLEEKHPDSKMMQINLTGFLNGKNAREFMRDLWPLLLSAQENIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKADDDKKEKDIRERAQSKSPRRRKTRSPSPRRRSP
VKRERKRSASRSPRRKPSPVESSSPPPPLMQLPMKPLEQLVEPDTLEGVLPEPVIQETPS
NCDTVVEVVKPDSVTEVKESSPEKTNKKEERPRSREREKDSRRERPHHRSRSHSRTRRRR
SRSRSYSPRRRQSPRRRMSPRRRSPPRRGPTSSRPRHRRSPVRRRRSRSASSSGSSSSNS
HSPKKAMKRISNTPPRKPVHHPDHPISPAGKDRRSPSPRPRRGRGSASPARSFGLKRKAG
GRGDSPSENAKPRPSEGSESDEDKNEKEATADSVQQRRQYRRQNRQSSSDTGSSSSEDEG
HKRPTTGPGDRNGEVRRRRSRTPSPRRRHRDTSPRKRHSPPPGRRRHTPSPPRRRRSPSP
PRRRSPSPPPRRRSPSPRRYSPPIQRRYSPSPLPPQKRKISSSPTKRSSPGAKRRPSRSP
KRRSSPALRRRTPPSSSPPRHRRSPMLPSVRPSRDTRSPVAAASRLSPSPANRSRAVRGS
ASPQGRFETSNTSPSNQRRQQSPLHSGKPIRRVSRTPEPRNNQRQSPSPQPMRRASSRSV
SPQPVAQKRPVPASASPSPSRSASASPPPAKKASSGSGSQSPSKNSDVEGSGKKKKKKKE
KKHKKEKKHKKHKKHKKEKSGGTVTGDGQENQGVEEDGQSRKESDSEVEDSLDDLEKHLR
EKALRSMRKAQLSPSQMS
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggattcttccgcggtacaagtgcggagcaagacaaccgtttcagcaacaag
cagaagaaactgctgaagcagctgaagtttgcagaatgtctggacaagaaggtggacatg
accaaagtgaacctcgaagtcatcaaaccttggattactcagcgagtgacagagattctg
gggttcgaggatgatgtcgtcatagagttcatatttaaccagcttgaggagaagcaccca
gatagcaagatgatgcagatcaacctgacgggcttcttgaatgggaagaatgcccgggag
ttcatgagggacttgtggcccctgctgctgagtgcccaggagaacattgctggcatccct
tctgcttttcttgaacagaagaaagaggaaattaaacagagacagattgaacaggagaag
ctagcttccctgaagaaggccgatgacgataagaaggaaaaggacatcagagagagggct
cagtcaaaaagcccaaggaggcggaagacaagatcaccatcaccacggcgtaggtcgcct
gtgaagagggaaaggaagcgtagtgcctcacgctccccgagacgcaaacccagtccagtt
gagagcagttcaccccctcctcccctgatgcagctacccatgaaacctttagagcagctt
gtggagccagatacattggaaggagttctgccagaaccagttatccaagaaactccatcc
aactgtgacacagttgtggaggtggtgaaaccagactctgtgactgaagtcaaagaatct
tcgccagagaagaccaataagaaagaggaaaggcccaggtcccgggaaagggagaaggac
agcaggagggaaagacctcaccaccgttctcgttctcattcccgcactcgcaggcgacgc
tcccgttctagatcttactcccctcgtagaagacagagccccagaagaaggatgtctcct
cgtcgaaggagcccccccagacgtggccctaccagctccagaccgagacataggcgctcc
cccgtccgcaggaggcgctctcgctctgcttcatcctctggcagcagctcttccaactct
cattcacctaaaaaagcaatgaaaagaatatctaacacaccgccccggaaaccagtccat
catcctgaccaccccattagccctgcagggaaggacagacgatcaccatctcctcggccc
agaaggggcagaggctctgcatcgccagcgcgatcatttggtttgaagcgaaaagcagga
ggaaggggtgattctccatctgaaaatgccaagcccagaccttctgaagggtctgagtca
gatgaggataaaaacgagaaagaggcaacagcagattcagtgcagcagcgacgtcagtat
cgcaggcagaatcgacagtcgtcttcagatacagggtcttcctcctccgaagacgagggg
cacaaaaggccaactacagggccaggtgacagaaatggggaagtcaggaggagacgcagc
cgcacaccctcccctcggaggcgacacagggatacttctccaaggaaaagacattctcct
cctcctggacgcagacgtcacaccccgtctcccccgcggcggcgcagatctccctctcct
cctcgacgaaggtcaccttccccacctccccgtcgtcgttctccatccccaagacgatat
tcaccccctatccagcgacgctacagcccctcaccgttgcctccacagaagaggaagata
tctagctctcctacaaaacgctcttctccaggggcaaagcgacgcccgtccaggtccccg
aagcgcagaagttctcctgctctaaggagacgcactcctccatcctcatctcctcccaga
cacaggaggagccccatgttgccttctgtcagaccaagcagggacacccgatcccctgtt
gcagcagccagccgcctctccccatcccctgcaaaccgcagtcgcgccgtaaggggttcc
gccagtcctcagggacgctttgaaacctccaatacatctccatctaaccagaggagacag
cagtcccctttacacagtggcaaacccatccgcagagtgtcccgcaccccagaaccacgc
aacaaccagagacaatctccaagtccccagcctatgaggagagcatcctccagatctgtt
tcccctcaaccagtagctcagaaacgtccagtccctgcatctgcctccccttcaccgtct
cgctcagccagtgcatctccgccaccagcaaaaaaagccagcagtggttctggcagtcaa
tccccaagcaagaattccgatgttgaggggagtgggaagaaaaagaaaaagaagaaggaa
aagaaacacaagaaagagaagaaacacaagaagcataagaaacataagaaggagaagagt
ggcggcacagtgactggagatggacaagaaaaccagggtgtggaggaggatggacagtct
agaaaggaatcagacagtgaagtagaggacagcttggatgacctggagaagcacctaaga
gaaaaggccctgcgctccatgaggaaggcccagttgtctccatcacagatgtcctga
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integrated database retrieval system
