Etheostoma cragini (Arkansas darter): 117935381
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Entry
117935381 CDS
T07493
Symbol
shprh
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH isoform X1
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecra04121
]
117935381 (shprh)
Enzymes [BR:
ecra01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117935381 (shprh)
Ubiquitin system [BR:
ecra04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117935381 (shprh)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
SHPRH_helical-2nd
Linker_histone
Helicase_C
zf-RING_UBOX
zf-C3HC4
PHD
zf-RING_2
zf-C3HC4_2
zf-RING_5
zf-C3HC4_3
DUF2089
TPR_10
Motif
Other DBs
NCBI-GeneID:
117935381
NCBI-ProteinID:
XP_034713415
LinkDB
All DBs
Position
20:6620874..6635823
Genome browser
AA seq
1660 aa
AA seq
DB search
MSSRRKRAPPVRVDEDAKKRLNWNMLDDRKNEEIQLGEQTPTCSIFPVDPPPRNSSLSTP
EGVPEAACSSSVCVPEEPPGTSADSSSASASLALSVVPALKLGHSWKALIGEFSLRPAWI
PSDCELRALVLHRMGEQLRLSYGGCDDSSGLQWSAEEDVCKAECSLGGILLEDLDWMQKR
KVVQLCHQAKESSVKVGIYLLETGLGKPEYLSEGNARMKKANQLMQKLMEYFYDFIIPEV
VVNENEEEECDTDLERQNVEELYDYVRHLHQRESQEVTYDVQDNALIPVLRPYQSQAVNW
MLKREKYRNTTPKEQILHFLWREVITLCSKKLFYNPFTGCLLREFPLAGVEWPGGILADE
MGLGKTVEVLALILFHHRQDVEQEALTLPVGKSVNYFVPPPPLEKKVIRCKSEVQPKMKV
SYPTVRVMLLTAIKAMRSGKGASVNAVFTYIRATYGYDLLKNRNHIKKMLVKLIDEGLVD
RVKGRGLAGSFKLGKNYKETKKTSTGASKSNSRNAESAPRKMFQRRAKEKAEAALQNSLL
TDDLRDQYSPASDCLEPEETATKKEWDESLKKKAEDMLDQSRTALQTTQDKSESETQDVP
RNDELLKERGESLPLDSKETETPTRASVVPFNTPDYRFECICGELGIVDYKARVQCMNCQ
LWQHADCVNYKEESLETTPFYCPHCLVAMKPVSTGATLIISPSSICHQWVEEINRHVRSS
SLRVLVYQGVKKHGFIQPHMLAEQDVVITTYDVLRSELNYVDIPHSNSKDGRRFRNQKRY
MAIPSPLVAVEWWRICLDEAQMVECPTAKAAEMALRLASVNRWCISGTPVQRGLEDLYGL
VLFLGVDPYWVKHWWDQLLYRPYRRGNTEPLYNVIAQLLWRSAKKDVIDQIQIPPQTEEV
HWLHFSPVEGHFYHRQHEVCSQDALAKLRKISDWRLKLGSLDRRTVHTILGPLLRLRQAC
CHPQAVRGEFLPLQKSTMTMEELLKSLQKKCRVECEEAHRQLVCALNGLAGIHIIRDEFV
EATEMYREVLRSSEEHKGRLKTDSLQRLHATHNLMELLSAKHPGIPPTLRDDRLSEEAEQ
LRQHYMTKYDSEVADAHQALQPVLQNIKELKRKVKLNNPWWLDVIQKAIRCSTDDDLVSR
IKNELTSSYKQQANKLTMAEKFRDACGLQFLLTTQMQDLMKSQKTVQDAVKSLEGPISKK
VIDEVTICHLRPMRLPLNNCVFCKADVLFIDYESKLFSHTVKGQTAIFEEMIEDEEGLMD
DRLPTTSRGLWAASETERSLKAILSFAKVKRMDPELVEEGNTFMELFEYWKKEYKVLHEY
WMVLRNHVSAIDELGMATERLRVRLPDEPKPKLLHIIEPHEVEQNRLKLLNDQAMAKSQL
QKKLGQFLYLTNLEKSQDKSTGGLNPEPCPICARPLGQEWAVLTCGHCFCNECIAIIVEQ
YSVGSRRRSIKCAICRQTTSLTEISYVFTTQASSQDQDIPVKGSHSTKVEAVVRTLKKIQ
VTDPGAKCLVFSTWLSVLDIIAKALFDNNMEFSQINGIHKFQENLCSFKYEEKINILLLP
LHTGSNGLNIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTFVHRFLIKSTIEERMQ
AMLKTAEKNHTSTTMKHSEAAVLTVADLADLFTEDTEHLE
NT seq
4983 nt
NT seq
+upstream
nt +downstream
nt
atgagtagccgaagaaagagggcccctcctgtgagggtggacgaagacgccaaaaagagg
ttaaactggaacatgctggatgaccgcaagaacgaggaaatccagctcggtgagcagaca
ccgacctgctccatttttcctgtcgaccctcctcccaggaactcctctctctctacccct
gagggtgtcccggaggctgcctgcagcagctctgtctgtgtcccagaggagcctccaggt
acgtccgcagacagcagctctgcctcagcctccctggccctcagtgtggtgccggctttg
aagctgggccacagctggaaggcgcttatcggggagttcagcctccggccggcttggatc
ccttctgactgtgaactgagagctttggtgctccacaggatgggtgagcagcttcgcctc
agctacggcggctgtgatgacagctcagggctgcagtggagtgctgaggaggacgtctgc
aaagcggagtgcagccttggtgggatcctgctggaggacctcgactggatgcagaagagg
aaggtggtgcagctctgccaccaggccaaagagagctcagtcaaggtggggatttacttg
ctggaaactgggctcgggaagccggagtacctcagcgagggaaacgctcggatgaagaaa
gctaatcaattaatgcagaagttaatggagtatttctacgatttcattatccccgaagtt
gtagtgaatgagaatgaggaggaggaatgtgacactgacctggagaggcaaaatgtggag
gagctctatgattacgtcagacatctgcaccagagagagagccaggaggtgacatatgac
gttcaggacaacgctcttattcctgttctcagaccctatcagagccaggctgtcaactgg
atgctgaagagagagaaatacaggaacactacgcctaaagaacaaattctgcatttcctc
tggcgggaggtgatcactttgtgcagcaagaagttgttctacaatccctttaccggatgc
ctattacgagagtttcccctggcaggtgtagagtggcctggtgggatcttggctgatgaa
atggggctgggaaagacagtggaagttctggctctcatcctgtttcaccaccgacaggac
gtggagcaggaggccctcaccctgccggtggggaaatccgtgaattatttcgtacctcct
cctcccctagagaaaaaggttatccgctgcaagtctgaagttcagcctaaaatgaaagtg
tcttacccaactgtgcgtgtcatgctccttactgcaatcaaggcaatgagatctggcaaa
ggagcctccgtcaacgctgtcttcacctacatccgtgccacttacggttatgacctccta
aaaaaccgcaaccacatcaagaagatgctggtgaagctgatcgacgaaggcctggtcgac
cgggtcaaaggccgaggcttagcggggtcatttaaactgggaaagaactacaaagagaca
aaaaagacctcaacgggagcatccaagtctaactccagaaacgcagagagcgcgcccagg
aaaatgtttcagagacgagcaaaagagaaggcagaagcagcgcttcagaactctcttctt
acagatgatctgagagatcagtactcccctgcgtcggactgtctagaaccagaggagacc
gcaacgaagaaggaatgggatgaaagtctgaagaagaaagcagaagacatgctggatcag
tccaggacggccttacagacgactcaggataaaagtgagtcagaaacacaggacgttccc
agaaatgatgagctacttaaagaaagaggagaatctcttccgcttgattcaaaagagact
gaaacccccaccagagcgtctgttgtccctttcaacaccccggactaccgctttgagtgc
atctgtggtgaactgggcattgttgactacaaggctcgtgtccagtgtatgaactgccag
ctgtggcagcatgcagactgtgttaactacaaagaagagagtcttgagactacacctttc
tactgccctcactgcctggtcgccatgaagcccgtctccaccggtgccaccctcatcatc
tccccgagttccatctgccaccagtgggtggaggagatcaaccggcacgtcaggtcctcc
tcgctgcgagtgctggtttatcagggtgtgaagaagcatggattcatccagccacatatg
ctcgctgaacaggatgtggtcatcaccacctacgacgtgctgcggtcagagctcaactac
gtggacattccccacagcaacagcaaggatggacgtcgcttccgcaaccagaagcgctac
atggccattcccagtcctctggttgctgtggagtggtggcgcatctgtctggacgaggct
cagatggttgaatgtcccactgccaaggctgcagagatggctctacgtctcgcatctgtc
aaccgctggtgtatcagtggcactccagtccagagaggcttagaagatctgtacggcctt
gtactttttctgggagttgacccgtactgggtaaaacactggtgggaccagctgctttat
cgaccttatcgccgtggaaacacagagccgctgtacaatgtaattgctcagttgttgtgg
cgatcagctaaaaaagacgtcattgatcagatccagatcccgcctcagacagaggaggtg
cactggctgcacttttcccccgtcgagggacacttctaccaccgtcagcacgaggtctgc
tcccaggatgctctggccaaactcaggaagatatctgactggaggctgaaacttggcagc
ctcgaccgccgcaccgtccacaccatcctgggcccgctgctgaggctgcgtcaggcctgc
tgccatccccaggctgtgaggggggagttcctgcccctgcagaaaagcaccatgacgatg
gaggagctccttaagtccctgcagaagaaatgtcgagtggagtgtgaagaagctcacaga
caattggtgtgcgctctcaatggtctggctggaatacacatcatcagagatgagtttgta
gaggcaacagagatgtatagagaagtgcttcgttcatcagaagagcacaaaggccggctg
aaaacagattcattacagcgacttcatgctacccacaatttgatggaattactcagcgca
aagcaccctgggatacctcccacgctaagagatgacagactaagtgaggaggcggagcag
ctgcggcagcactacatgaccaaatacgactctgaggtagcagacgcccatcaggctctg
cagccggtgctacagaatatcaaagagctgaaacgcaaagtgaagctgaataatccctgg
tggctggatgttatccagaaggcgatccgctgctccactgacgacgacctggtgtctcgc
attaagaatgagctgacttccagctacaaacaacaagccaacaagctcaccatggcagaa
aagttccgcgatgcctgtggtctgcagttcctactcaccacacaaatgcaagatctgatg
aaatcccaaaagactgtgcaggacgcggtgaagagcctcgaaggtccgatttcaaagaaa
gtgattgatgaggtcaccatttgtcaccttagacctatgagactgccactcaataattgt
gttttttgcaaagcggatgtacttttcattgattacgagtccaagctgttttctcacacg
gtgaagggtcagacggccatctttgaagaaatgattgaagatgaagaggggctgatggac
gaccgtctccccaccaccagccgaggtctgtgggcagccagcgagactgagcgctcgctc
aaagccatcttgtcttttgccaaagttaaacgcatggacccggagttggtggaggagggt
aacactttcatggagctgtttgagtactggaagaaagagtacaaggtgctgcatgagtac
tggatggtgctgaggaaccacgtgtcggccatcgatgagctgggtatggctaccgagaga
ctacgtgtgcgtctgcccgatgaacccaagcccaaactgctgcacatcattgagccacat
gaggtggagcagaacagactgaagcttttgaacgaccaggccatggccaagtctcaactc
caaaagaagcttggccagtttctgtatctcacaaacctggagaagtcccaggacaagtct
actggagggctgaacccagagccgtgccccatctgtgcccggcccctgggacaggagtgg
gcagtgctgacctgtggccactgcttctgcaatgagtgcattgctatcattgtggagcag
tacagcgtgggctcaaggcggcgttccattaaatgtgccatctgcaggcagactacgtcc
ctcacagagatctcctacgtgttcaccacccaggcgtccagtcaggaccaggacataccg
gtcaaaggaagccactctaccaaggtggaggcagtagtgagaacacttaagaagattcaa
gtgaccgaccccggggccaagtgtctcgtcttctccacgtggctgagtgtcctggacatc
attgccaaggccttgttcgacaacaacatggagttctctcaaatcaatgggattcacaaa
ttccaggagaatctttgctccttcaaatacgaagaaaagatcaacatccttctccttcct
ctccacaccggctccaatggtttgaacattatcgaagcaactcatgtgttgctggtggag
ccgatcctcaacccggctcacgagctccaggccataggcagagtgcaccggattggccaa
accaagccaacgtttgtccacagattcctcatcaaatccaccattgaagagagaatgcag
gcaatgctgaagacagcagagaaaaatcacaccagcactaccatgaagcactcggaggct
gccgtactgacagtagccgacctggctgatctgtttactgaagacacagaacatctggag
tga
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