Etheostoma cragini (Arkansas darter): 117935647
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Entry
117935647 CDS
T07493
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04140
Autophagy - animal
ecra04148
Efferocytosis
ecra05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117935647 (vps39)
04148 Efferocytosis
117935647 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
117935647 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecra04131
]
117935647 (vps39)
Membrane trafficking [BR:
ecra04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
117935647 (vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
Motif
Other DBs
NCBI-GeneID:
117935647
NCBI-ProteinID:
XP_034713858
LinkDB
All DBs
Position
20:complement(219609..246127)
Genome browser
AA seq
905 aa
AA seq
DB search
MHDAYEPVPILEKLPLQIDCLAAWEDWLLVGTKPGHLLLYRIKKDAGGKCDATHSLGVCR
PSELNVSFFLPLFPLGTNRFEVTLEKSNKNFSKKIQQLYVVSQYKILVSLLENNIHVHDL
LTFQQITVVSKAKGASLFACDLQQTSAGEERLRMCVAVKKKLQLYYWKDREFHELQGDFG
APDIPKSMAWCENSICVGFKRDYYLIRMDGRGSIKELFPTGKQLEPLVAPLADGKVALGQ
DDLTVVLNEEGVCTQKCALNWTDIPIAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSVELQ
RPRFITSAGQNIVYVASNHFVWRLVPVSIATQIRQLLQDKQFELALQLAKMKDDSDGDKK
QQIHHIQNLYAFNLFCQKRFDDSMQVFAKLGTDPTHVIGLYPDLLPSDYRKQLHYPNPLP
ALSGAELEKAHLALIDYLTQKRSHLVKQLNDSDPSTTSPLMEGTPTIKSRKKLLQIIDTT
LLKCYLHTNVALVSPLLRLENNHCHIEESEYVLKKAHKYSELIILYEKKGLHQKALQVLL
DQSTKANSPLKGHERTVQYLQRLGVENLGIIFEFSPWVLKICPEDGLKIFTEDLTEVETL
PRDKVLNFLKEGFKELAIPYLEHIIYVWDDKGPEFHNVLIQLYLERVQGLMKQYLNSLPE
GVPAVAAGKEEGDLGEFRNKLLSFLDISTSYEPARLISDFPFDGLLEERALLLGRMGKHE
QALFIYVHILRDTRMAEEYCHGHYNSLVEGNKDVYLSLLRMYLSPPDVHCLGPIKMELSE
PQANLQAALHVLELHHSKLNTTKAINLLPANTQIREIQVFLESVLEERAQRKRCNQVLKS
LLQAEFLRVQEERIFHQQVKCVITEEKTCRVCKKKIGNSAFARYPNGVVVHYFCCKDRSA
CPTEQ
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcgtatgaaccagtgcctattttggagaagcttcctctccagattgactgt
ctcgcggcctgggaggactggctgcttgtgggaacaaagccaggacatcttctcctctac
cgaataaagaaggatgcaggtgggaagtgtgatgcaacccattccttgggtgtttgcaga
ccttctgaacttaacgtttccttttttctgcctctattcccattaggcaccaaccgtttc
gaggtcaccctggaaaaatccaataagaacttctcaaagaagattcagcagctgtacgtt
gtctctcagtacaaaattctcgtcagtcttttagagaacaacatccacgtccatgacctc
ctcaccttccagcagatcaccgtggtgtccaaagccaaaggagcctcgctgtttgcctgt
gacctgcagcaaaccagcgcaggagaggaaaggttgagaatgtgtgtcgcagtgaagaag
aaactccagctgtattactggaaggacagagagttccacgagctgcagggggacttcggt
gcaccagatattccaaagtccatggcttggtgtgaaaactccatatgtgttggtttcaag
cgagactattacctcattcggatggatggccggggctccatcaaggagctcttccccact
gggaaacagttggagcctctggttgccccactggctgatgggaaggtggctcttggccag
gatgacctaaccgtagtgctaaatgaagagggcgtctgcacccagaagtgtgccctgaac
tggacagacatccccatagcaatggagcaccagcctccgtacatcatagctgttctccct
cggtacgtggagatccggacgtttgagccgaggctgctggtgcagagcgtggagctgcag
aggccgcgcttcatcacctcagcagggcaaaatattgtgtatgttgccagcaaccacttt
gtgtggcgcctggtgcccgtgtcaatagccacccagatccggcagcttcttcaggacaag
cagtttgagctggctctgcagctggcgaagatgaaggatgattcggatggtgataagaag
cagcagatacatcacatccagaatctctatgccttcaatctgttctgccagaagagattt
gatgactccatgcaggtgtttgccaaactgggcacagatcccacccatgtgattggcctg
tacccagacctgctcccgtcagactaccgcaaacagctgcactaccctaaccccctgcct
gctctgtccggggcagagctggagaaggctcacctcgctctcatcgattacctcacccag
aaacgcagccaccttgtgaaacagctcaatgactctgacccctctacgacgtctccactc
atggagggcacacctaccattaaaagccgcaaaaagctcctgcagatcatcgataccacc
ctgctgaaatgttacctgcacaccaacgtggccctggtgtcgcctctccttcgtctggaa
aacaaccactgccacatcgaggagagcgagtatgtcctgaagaaggcccataaatacagc
gagctcattattctctatgagaagaaaggcctgcaccagaaagctctgcaggtgctgctg
gaccagtccaccaaggccaactctcccctgaagggccatgagcgaacggtccagtacctt
caaagactgggagtggagaatttgggaataatctttgagttttctccctgggtgttgaag
atctgtcctgaggatggcttgaagatcttcaccgaggacctgacagaggtggagactctg
cccagagacaaggtgctgaactttctgaaggagggctttaaggagctcgccattccatat
ttggagcacatcatttacgtgtgggatgataagggcccagagtttcacaatgtgctgatc
cagctctacctggagagggtccaaggcctcatgaaacagtacctcaactcactgccagaa
ggagttccagctgttgctgcggggaaggaggaaggggatctgggagagttcaggaacaag
ctgctgtcgttcctggatatttctaccagctatgaaccagccagactcatcagtgacttt
ccctttgatggtctgctggaggaacgggctctgctgctgggtcggatgggtaaacatgag
caggcgctcttcatctatgtgcacatcctgagagacacccgcatggctgaagaatactgt
cacggccattacaacagtttagtcgaggggaataaagatgtttatctgtccttgctacga
atgtacctgtcacctcccgacgtccactgcctggggcccatcaagatggagctgtcggag
cctcaagccaacctgcaggcggcgctgcatgtcctggaactgcaccacagcaaactcaac
accaccaaggccatcaatctgctcccggcaaacacccagatccgagagatccaggtcttt
ctggagagcgtgctggaggagagggcgcagaggaagcgctgcaaccaggtgctgaagagt
ctgctgcaggccgagttcctcagggtgcaagaggagcgcatcttccaccagcaggttaaa
tgtgtcatcacagaggagaagacctgcagagtctgcaagaagaaaataggaaacagtgcg
tttgccaggtatcccaacggcgtggtggtgcattacttctgctgtaaagaccgcagcgcg
tgtcccactgagcagtaa
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