Etheostoma cragini (Arkansas darter): 117935711
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Entry
117935711 CDS
T07493
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecra03021
]
117935711 (scaf8)
03041 Spliceosome [BR:
ecra03041
]
117935711 (scaf8)
Transcription machinery [BR:
ecra03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117935711 (scaf8)
Spliceosome [BR:
ecra03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
117935711 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
117935711
NCBI-ProteinID:
XP_034714010
LinkDB
All DBs
Position
20:complement(17528928..17556350)
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AA seq
1418 aa
AA seq
DB search
MEAVKAFNNELYSLNEYKPPISKAKMTQITKSGIKAIKFYKHVVQSVEKFVQKCKPEYKV
PGLYVIDSIVRQSRHQFGTEKDVFAPRFSKNIIPTFQHLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGIAPPSITPVMSSAAPVNNTTPGTPATPATPANIVQGLPDWASQ
ITNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQLT
AAATANSLNPLEQRVSSFNKKLLGPFDFGNDSERGEESKKDSSSSQLPMVSEPINSSIFH
QLAEQLQQQNLEQFQKQLLEHQQHQQKAMSMEGQDSIYGQENSTAQSSSQPQLPEQDNKV
DDSMDNQQQDMDLDEGLDGMEEEIFEAEEKKNVSTRSRTRSRSRSRSPKRRRSRSRSGSR
KRKHRKRSRSRSRDRKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQ
VDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRARQKLSTGSFKIGSKI
IKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKLDDLDDFAEGGIIDQETVNDEWEAAK
NVEPAKEVTSQPVSAETTAASNTQTESYNPQVTMMPVQLPVAQAVPSAVGLVPPSFPVTM
GIPPPGYGPPPPFIRAGFNASQPPPGFMQAAQTAAMASAAASLVQSSVATSQEAVKESPF
SAMIPPTSTMPGGFMAGVFNPVGIQTHQANEKTSQSAESMDAAAELTLQGMQNAVRSGMG
LLGMHPTASLTHQLHHSGLTGQRMPGLLPLDVRPNLLQPGAARFPLLMQHGSIQQAAGLL
ESSLQAQARARTPFSQLDPFNRPPNLTNENVSKTEDKSPSGADEGKDQDYRFPPMEKPST
GLLRTPPLEHREPLGGGGGAGGGGGGRPPLLQTPGAQPARTSLVGRLQALAGFTPDSRWN
QTRGDFDERDAMRGGLQTSGGPKGFQEERPTPGQNFPSRFESHPGTVGGGGAAAAAAGVS
GNTGAVGGPQAWNRSGGAAAPFDSELHQDLDERRRTWDRQRDRDERDFDFRREMNGNRHS
RERERERERERDRERGRDRPREHERDRDRDKERDRERERERGCWTPLLPLPTPLLPTPPL
NPNLTLNHGKLLGPLKLNPQIHPRFQSPLLPQAQAKPPLLGLNQPLPQVQKSPPQSQSEA
AVPNPQSETPALSETPLAQSPPSAQSSDLSSDNNGQSSLNEAPTQAGSSPQPETPPQTES
PSQCPSPAQSPSNTTASPETEAPYEVSPLVKASSQDSPVAFTQADSPPEETHSLEELESP
LKDEEESQESAASTQPQWVNGSGMDNSTVAESTPEASPELSPELSPEPTEEPSPESLLPE
SEPEQLASPEDVDNEQSEPMEEAASQPVVDTVTDTEGT
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaaagcctttaacaatgagctgtactcattgaacgagtacaagccgccg
atctccaaggccaagatgacccagatcaccaagtctggaatcaaagctataaaattctac
aagcacgttgtccagagtgtagagaagtttgttcaaaagtgcaaacccgaatacaaggtc
cctgggctgtacgtcatcgactcaattgtcagacagtcgcggcaccagtttggcacagag
aaggatgtttttgccccacgcttcagcaagaatatcatcccaacgttccagcacctctac
cgctgcccttctgatgataagagtaagatagtgcgagtcctgaacctgtggcagaagaat
gcggtcttcaagagtgacatcatccagcctctgttggacatggcagcagggattgcccct
cccagcatcacacctgtaatgtccagtgctgctccagtcaataacactacacctggcacc
ccagctactccggctaccccagctaacatagtccagggtctgcctgattgggcttcccag
attaccaacacagacactgtggctgctgtggcacagatcctacagagtccccagggacaa
cagctgcagcagctggtacagagtctacaaatgcagcagcagaagccccagccgtccctg
ctgcaggccttggatgctggcctggtggtgcagttgcaagctctgacagctcaactcacg
gcggccgcgactgccaacagcctcaaccccctggagcaaagggtctcctcttttaataag
aagcttctgggtccttttgattttgggaatgattctgaacgtggtgaagaatccaaaaag
gactcctcatcatctcaactgcccatggtgtcagagcccatcaacagctccatcttccat
cagctggctgagcagctacaacagcagaacctggaacagtttcagaagcagctcttagag
caccagcagcaccaacagaaggcaatgagcatggaagggcaggactcaatctatgggcaa
gagaactcgactgctcagagcagcagccagccacagcttcctgagcaagataacaaggtg
gatgactccatggacaaccaacagcaggacatggatctagatgagggcctggacggtatg
gaggaggagatctttgaggcagaggagaagaagaatgtaagcacccgctccagaacacgc
tcaaggtcacgttctaggtctcccaaaaggagaaggtccaggtcccggtctgggtcccgg
aaacgaaaacaccgcaagcgatcccgctcacgctcccgagaccgcaagaggaagtcatca
cgatcttactcaagtgaaagacgcgcccgagaacgagagaaggagcggcagaagaaagga
ctgcctcccatacgatccaagactctaagtgtgtgcagcacgactctgtgggtgggccag
gtggacaaaaaggccactcagcaagacctcaccaacctatttgaagagtttggccagatt
gagtctatcaatatgatcccccccagaggctgtgcctacatctgtatggtccacagacag
gatgcgtaccgcgcccgccagaaactcagcactggctcttttaagattggctcaaaaatt
atcaagattgcatgggctctaaacaagggggtaaagcaggagtacaagcagttttgggat
gtggacctaggcgtcacgtacataccttgggagaaggtgaagctggatgacctggatgac
tttgctgagggaggaatcattgaccaggagactgttaatgatgagtgggaagcagccaag
aatgtggagccagccaaggaagttacaagtcagccagtaagcgctgagactacagcagca
tcgaacacccagactgagagctacaacccacaggtcaccatgatgcctgtacagctccca
gtggcccaggctgttcccagtgcagtaggtttggtgcctccttccttccctgttaccatg
ggcatacccccaccaggctacggcccaccaccaccttttataagggctggattcaatgcc
tcacagcctccgccaggttttatgcaggcagcacagacagcagccatggcctccgcagca
gcttctctagtgcagtcttcagtggcaaccagccaagaagctgtcaaggaatcaccattc
agtgccatgattcctccgaccagcacaatgccgggcggcttcatggccggtgtgtttaat
ccagtgggaatccaaactcatcaagccaatgagaaaacatcacagtctgcagagagcatg
gatgctgctgcagagcttacactgcaaggcatgcagaatgcagtccgcagtgggatgggt
ctccttggtatgcaccccacagcttcgctcacccaccagctgcatcattctggtctgact
gggcagagaatgcctggcctgctccctctggatgtgcgacctaacctcctgcaacctggg
gctgcccgcttcccactcctcatgcagcatgggtccatccagcaagctgctggcctcctt
gagagttccctccaggctcaagctcgtgccaggactcccttctctcagcttgaccccttt
aacaggccccccaaccttaccaatgaaaatgtatccaagacagaagataagtctccctct
ggagctgacgagggcaaagaccaggactaccgcttccctccaatggaaaagccgagcaca
ggcctgctgaggacccctccactagagcatagggagccccttggaggtggcggcggagca
ggaggtggtggggggggcaggcctcccttgctccagaccccaggggctcagccagccaga
accagcctagtgggacgtctgcaggctcttgcaggatttactcctgacagccgttggaac
cagaccagaggcgactttgatgaaagggatgccatgcgaggaggcctacagacctcaggc
ggtccaaaaggcttccaggaggagcggcctacacctgggcagaacttccccagccgcttt
gaaagccatcctgggacagtaggaggaggaggagcagcagcagcagctgctggagtttca
ggcaatacaggagctgttggagggccacaagcctggaaccgaagtggtggtgccgcagcc
ccctttgacagtgaactacatcaagacctagatgagcgaagacgcacatgggacaggcaa
agagacagagatgaaagagattttgactttaggagggaaatgaatggcaaccgccacagc
cgagagagagagcgggaacgcgagagggagagagacagggagcgaggcagagaccgcccc
agagagcatgaacgcgacagagaccgcgacaaagagagagaccgcgagagggaacgtgaa
cgtgggtgctggacacctcttctccctcttcctacacctttgcttccaactccacctctt
aatcccaatctgaccctgaaccacggcaaactgcttggaccactcaaattaaacccccaa
attcacccacgattccagtccccactcttgcctcaagctcaagccaaaccccctctcttg
ggtctgaatcagccactgcctcaggttcagaagtctccacctcaatcacagagcgaggca
gctgtgcccaatccccagtcagaaaccccagctctgtctgagacacctctggcacagtca
ccaccctcagcccaatcatctgacctgtcatctgacaacaatggtcagagctcattgaat
gaggctcccacccaggccgggtcatcgccacaacctgagacccctccacaaacagaatca
ccatctcagtgcccgtccccagcccagtccccctccaacaccaccgcttctccagaaact
gaggccccatacgaagtctcaccgctggttaaggcctcatcccaggattcacctgtggcc
ttcacacaagctgacagcccccctgaagagactcactctctggaggagctggaaagccca
ctgaaggatgaggaagagtcacaagaaagtgccgcctcaacccaaccccagtgggtcaat
ggatctgggatggacaatagcactgtggctgaatctacacctgaggcatctcctgagctc
tctcctgagctctctcctgagcccactgaagaaccctctcctgagtctttgctccctgaa
agtgaaccggagcagcttgcttctcctgaggacgtagacaatgaacagagtgagcccatg
gaggaagctgcgagtcagccagtggtagacactgtcacagacactgaggggacataa
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integrated database retrieval system
