Etheostoma cragini (Arkansas darter): 117935847
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Entry
117935847 CDS
T07493
Symbol
lrfn5a
Name
(RefSeq) leucine-rich repeat and fibronectin type-III domain-containing protein 5
KO
K16358
leucine-rich repeat and fibronectin type-III domain-containing protein 5
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
117935847 (lrfn5a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ecra04515
]
117935847 (lrfn5a)
04990 Domain-containing proteins not elsewhere classified [BR:
ecra04990
]
117935847 (lrfn5a)
Cell adhesion molecules [BR:
ecra04515
]
Immunoglobulin superfamily
SALM family
117935847 (lrfn5a)
Domain-containing proteins not elsewhere classified [BR:
ecra04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
117935847 (lrfn5a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
Ig_3
I-set
LRR_5
LRR_4
LRR_1
ig
Ig_2
LRR_9
fn3
C2-set_2
FN3_DSCAM-DSCAML_C
C2-set_3
Ig_5
Rop
Motif
Other DBs
NCBI-GeneID:
117935847
NCBI-ProteinID:
XP_034714290
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All DBs
Position
20:complement(19345419..19458921)
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AA seq
867 aa
AA seq
DB search
MERLWLCVMLAVAMAVRAQICPKRCVCQILSPNLATLCAKKGLLFVPPNIDRHTVELRLA
DNFVTSVKRKDFANMTRLVDLTLSRNTISYITPHAFADLENLRALHLNSNRLTRIGNDTF
CGMSKLHHLILNNNQLMLIHQGAFNDLLALEELDLSYNNLDTIPWEAIQKMISLHTLSLD
HNMLDFIPEGTFSLLQKLNRLDVTSNKLLKLPPDPLFQRAQVLATSGIMTSTSFALSFGG
NPLHCNCELLWLRRLNREDDLETCASPQHLSGRYFWSIPEEEFLCEPPLITRYSHEMRVL
EGQRVILRCKARGDPEPAIHWISPEGKLVSNSSRTLVYNNGTLDILISTVKDTGSFSCIS
SNPAGEAHQTIDLVIIKLPHISNNTNNIQEPDPGSSDISTSTRGGANGSNVTGDVKGGVD
KRVVTAEATSSTALIKFNFQRNIPGIRMFQIQYNGSQDDSLVYRMIPPSSKNFLVNNLAA
GTQYDLCVLAIYDDVITSLTATRVVGCVQFHTESEYMRCHFMQSQFLGGTMIIIIGGIIV
ASVLVFIIILMIRYKVCNPGEGGKGVSLSMTNVHSQTNGQQSQGCTVTPSSSKHGSIGLD
DLSGGTKKRSGAGGGRGGGKDTMTQSSDSSLPDCSTTTSILSQPWAAKSPTAGAEEWEKA
GEERAQADNLSPTGTGGSLSKPKRKPTPSKPGSACSNTSATPENLPSPRPPSSSFSTASP
ALPPSSTLENLNTNRNNSTSLNQTPPPFVPSFFSSPLATPSPVPAIRFRETPILRRAPRA
GTSSSAKYQTLPVEEAGRSRGRRRYSLSEGGSKTHSSHQGAGGAPKIGRIMRDKRSQSMS
GILLPKDGDGDSDKGRCESDWILESTV
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atggagaggctgtggctgtgtgtgatgctggcagtcgccatggcagtgcgggcacagatc
tgcccgaagcgctgcgtatgtcagatcctgtcacccaacctggcgaccctctgcgccaag
aaaggtctactgtttgtaccgccgaacattgataggcatacagtggagctacggctggct
gacaactttgtcacaagtgtgaagaggaaagattttgcaaatatgacacggctggtggac
ctaacattatccagaaacaccatctcctacatcacacctcatgcctttgctgatttggaa
aaccttagagctctacacctcaacagtaaccggctgacgaggataggaaatgacacattt
tgcgggatgtcgaagcttcaccacctgattttgaacaacaatcagctgatgctgatccac
cagggagcattcaacgacctgctggcactggaagaactggacctcagttacaataacctg
gacactattccttgggaggccatccagaaaatgattagcctccatacattgagtttagac
cacaatatgctggacttcattccagagggaacattttctctgctgcagaaactcaaccgg
ctggacgtcacctctaataaactcctaaagctgccgccagatccactttttcaacgagca
caggtcctggcgacatcagggatcatgacctccacgtcttttgcattatcattcggtgga
aaccctctccactgcaactgtgagttactgtggctgcgaaggctaaacagagaggacgac
ctggagacatgcgcttcaccccaacacctctctggtcgatacttctggtccatccctgag
gaagagtttctctgcgaacctccactcatcaccagatactcccatgagatgcgggtgctt
gaggggcagagagttatactcaggtgtaaggcaagaggtgacccagagccagcaatccac
tggatctctcccgagggcaaactggtgtctaactcctccagaacgttggtctacaacaac
gggaccctggacatcctcatcagtacggtgaaagacactggctccttcagctgcatctcc
tccaaccctgccggtgaagcccaccaaacaatagacctggttattataaaactcccccac
atctccaacaacaccaacaacatccaggagcccgacccgggatcgtcagacatttccacg
tcaacccgaggcggagccaacgggagcaacgtgacgggtgacgttaagggtggggtggat
aagagggttgtaacggccgaggccacgtcatcaacagcgctgatcaagttcaacttccag
aggaacattccaggcataaggatgttccagatacaatacaatgggagccaagatgactca
ctggtttacagaatgatccccccatcaagcaaaaacttcctggtcaacaacctggcagca
gggacccagtacgacctctgcgtgctggccatttacgatgatgtcatcacctctctgaca
gcaacacgtgtggtcggctgtgtgcagttccacaccgagtctgagtacatgcggtgtcat
tttatgcagtctcagttcctcggcgggactatgattatcatcatcggagggataatagtg
gcttcagtgctcgttttcatcatcatcctgatgatacggtacaaggtgtgtaaccctggt
gagggtggtaaaggtgtttcattgtcgatgaccaacgttcactcacagaccaatgggcaa
cagtcgcagggatgcactgtgactccaagctcctctaaacacggctcaatcggattagac
gacctctcaggaggcacaaagaaaaggagtggagcaggaggaggaagaggagggggtaag
gatacgatgactcagtcgtccgactcatccctgcctgattgctccacgactacgtcaatt
ctcagccagccttgggcagccaaaagcccaacagctggagccgaggaatgggagaaagcg
ggtgaagagagagctcaagctgacaacttgtcgcccaccggcaccggcggttcactaagc
aagccaaagcggaagcccactccaagtaagccaggctcggcttgctccaacacctcggct
acaccagaaaacctcccctcccctcgtcctccttcctcctccttctctaccgcctcccct
gctctccccccttcctccactctggagaatctgaacactaaccgcaacaactccacctct
cttaaccaaaccccacctccctttgtcccttcctttttctccagccctctcgccacccca
agccccgtccccgccatccgttttagagagacacccatcctgcgcagggctcctcgcgca
ggtacctcatcctccgccaagtaccagactctccctgtggaggaggcagggaggagcagg
gggaggaggaggtactcgcttagtgaaggtggctcaaagactcactcgtcacatcaggga
gcaggaggagcccccaaaatagggcgcattatgcgggacaaaaggagccaatcaatgagc
gggatcctactcccaaaagacggggatggcgactcagacaagggccggtgcgagtcggac
tggatcttagaaagcacagtttga
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