Etheostoma cragini (Arkansas darter): 117936033
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Entry
117936033 CDS
T07493
Symbol
hif1aa
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha a
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04137
Mitophagy - animal
ecra04140
Autophagy - animal
ecra04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117936033 (hif1aa)
04137 Mitophagy - animal
117936033 (hif1aa)
04148 Efferocytosis
117936033 (hif1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecra03000
]
117936033 (hif1aa)
Transcription factors [BR:
ecra03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
117936033 (hif1aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
HIF-1a_CTAD
PAS_11
HIF-1
PAS
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
117936033
NCBI-ProteinID:
XP_034714675
LinkDB
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Position
20:complement(13711918..13728639)
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AA seq
749 aa
AA seq
DB search
MDTGIVPEKKRVSSERRKEKSRDAARSRRGKESEVFYELAQQLPLPHSVSSSLDKASIMR
LIISYLRVRKLLSTAEPRAEEETELDTQLNSSYTKALEGFLMVLAEDGDMIYLSENVNKC
LGLAQFDLTGHSVFDFIHPCDQDELREMLVYKTGPKKAKESNTERSFFLRMKCTLTSRGR
TVNVKSATWKVLHCSGHVRVYDSHTEETPNGHKEPPVPYLVLICDPIQHPSNIEVPLDTK
TFLSRHTMDMKFTYCDERITELMGYDPEDLLDRSVYEYYHALDSDHLTKTHHNLFAKGQV
STGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNFVLSGIQEEKQILSLEQIEDV
KPVKVEEKAVVESSQPNMSPTLLKDEEKGPELDVIKLFTQAVEAQPLASLYDQLKEEPEA
LTLLAPAAGDAIISLDFSCPDSEIQLLKEVPVYNDVMLPSTSDNLALPLYPLLPGEPLHV
TTTSSEDAKAKSYAPAPSTTSTSQSSTEADSPLDFCFPMDSEMSSDFKLDLVEKLFAIDT
EPKTPFNTQTMEDLDLEMLAPYIPMDDDFQLRSLSPEELLSGGPVKSLESSPVHVTQDIN
SYPSSPFNAPGSRTASPAPLNAPNPAIVVAKRTPQLDKEVSLRTLAAQNAQRKRKLGDLI
EMIEQGTLPQEEVEQGKKLRASDSGTTRTILLLPSDMASRLLGSTSEGTSSLFTLPQLTR
YDCEVNAPLQGRQFLLQGEELLRALDHVN
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggacacaggaattgtaccagaaaagaaaagggtgagctcggagcggaggaaggagaag
tcgagggatgcagcacgaagccggcgtggaaaggagtcggaggtgttctatgagctggca
cagcagctgcccctgccccacagcgtcagctccagcctggacaaggcctcgataatgagg
ctcatcatcagctacctgcgcgtgagaaaactgctcagcactgctgagccaagggcagag
gaggaaaccgagcttgatacacagctaaacagctcctacacaaaggctttggagggcttt
ctcatggttctggctgaagacggagatatgatctatctctctgagaatgtcaacaagtgt
ctcgggctagcacagtttgacctgactggacacagtgtgtttgacttcatacatccctgt
gaccaggacgagctgagggagatgctggtctataaaacaggccccaaaaaggccaaggaa
tcaaacacagagcgcagcttcttcctccgaatgaaatgcactctcacgagcaggggccgc
actgtcaatgtgaaatcagctacatggaaggtgctccactgctcgggtcatgtccgtgtt
tatgacagccacactgaggagactcccaacgggcacaaggagccacctgttccctacctg
gttttgatctgtgaccccatccagcacccctccaacattgaggtcccactggacaccaag
acctttctcagccgacatacaatggacatgaagttcacgtattgtgacgagaggatcact
gagctcatgggttatgatccagaggacctgttggatcgttctgtgtatgagtactatcat
gctttggactcagaccatcttaccaagactcaccacaacctgtttgcaaagggccaggtc
agcacaggccagtaccggatgttagccaagagaggaggctttgtgtgggtggaaacacaa
gccactgtcatctacaacaacaagaattcccagccacagtgtgttgtctgtgtcaacttt
gtgcttagtggcatccaggaggagaaacagatcttgtctctggagcagattgaggatgtg
aagccagtgaaggtggaagaaaaagctgtggttgagagcagccaacccaacatgtctcca
accctgctaaaggacgaggagaagggcccagagctggatgtgatcaaactgttcactcag
gcggtagaggcccagcctttggctagcctgtatgaccagttaaaggaagagccagaagcc
ctcaccttgttggcccctgctgcaggagacgcaatcatctccttggactttagctgccct
gattcagagatccagctgctgaaggaggtccctgtctacaacgatgtaatgctaccatcc
actagtgataatttggctctgcctctttaccctctgctgcccggggagcctcttcatgtt
accacaaccagctctgaggatgccaaagctaagagctatgctccagccccgtccaccaca
tcaaccagccagagctccacagaggctgacagtccgctggacttttgtttccccatggac
tcagagatgagctcagatttcaaactagacttggtcgagaagctgtttgccattgataca
gagccgaagacccccttcaacacacagacaatggaagatttagatctggagatgttggct
ccctacatccccatggatgatgacttccagctgcgcagtctgagcccagaagagcttcta
tctggtggaccagtcaaatcccttgagagttctccagtccatgtcacacaggacatcaac
agctatcctagctccccattcaatgcaccaggcagtcgcacagcttccccagcacccctc
aatgcccctaatcctgccatcgttgttgctaagaggaccccacagctggacaaagaggtc
tcgctcaggaccctggcagctcagaacgcacagcgcaaaagaaaattgggtgacctaata
gagatgattgaacagggaactttgccacaggaagaagtggagcagggcaaaaagctgaga
gcctccgattccggaaccaccaggaccatacttctgctgccttcagatatggctagtcgt
ttactgggcagcacgtcagagggaaccagttcccttttcactcttccgcagctcacgcgc
tacgactgtgaggttaacgcccccttgcagggtcgtcagttcctgctgcagggagaggag
ttgctgcgcgctctggaccatgtcaattga
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