Etheostoma cragini (Arkansas darter): 117936172
Help
Entry
117936172 CDS
T07493
Symbol
si:ch211-266g18.9
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 isoform X1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117936172 (si:ch211-266g18.9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecra04131
]
117936172 (si:ch211-266g18.9)
Membrane trafficking [BR:
ecra04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
117936172 (si:ch211-266g18.9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
Clathrin
TPR_Vps41
zf-Vps39_C
Roquin_1_2-like_ROQ
BTG
Motif
Other DBs
NCBI-GeneID:
117936172
NCBI-ProteinID:
XP_034714900
LinkDB
All DBs
Position
20:complement(9680480..9688144)
Genome browser
AA seq
839 aa
AA seq
DB search
MAFRAFTQTHIYEKQSAPKEKDKSSIQCLECYDPNVYIGTKNATVQHLILLSSTNGDLSP
GQSKFREGRLRKLGSSNHVAQLRVVPLFNHLLVLWDRSVTALNMFSLEPVTTLKKIQHVS
FFEVCDSLLAAQTACVEMVTSSSRRKVIQIHVVGVDRWDVVKEVPLLQDPVALAIDGASV
CVATSDRYLLCDIRTGSSEELFPHNHSRQRVIVTSVGRGEFLLNGPESLGMFVMKTGICQ
RPPLQWPQEVLAAGVCFPYILTLEPQVLSVYSMVDQQIKQTVGLSGATGLLSTSDGVLVF
TERDIFSLRLVPLDQQIQALVRHERIEEALLLLDGVQGHCPCDSYKELQKAITCLAGFVH
FYREGFSEAKELFITGELDPREIIHLYPDMQSCLSEDFKSQLDQVNKGRDLQVLCQENRN
TFHHYLAFLGDFLRAVRGMEQGLKCAQEVDCALLRLYLELGDTENLQQLVASPNECGLDN
CVPVLEQHNRFFALGSLYQSNGHQIDAIETWVKIADGFHKDPSCSDVYGHIVWTLSQLQD
RDAVWTFADWTLQRNQEIGVQIFNKRPPDGQFEAQNVLALLEKYPLALLLYLEFLIHDLN
SKEERHHNRLALAYVTQTLQEEEKADLRRTRGKLQQLLWESKCYDVSTVYERVKSATLHI
EKAILLGRTGEHCKALQVLVHQEGDLQAAEAYCCRAAQGRDSQFRQTLLLTLLQIYLSSE
ALTSAAVDLLNNNPRVFVAEKIIQLLPDSWSIQVVSQFLVRSLRESFHQRQMARLQKALG
QAECMRHKAIWQMQASNKKFRLDKGQKCKVCQRDLAEPQFACNLHGELMHTSCTGYSSS
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggcttttagagcatttacacaaacacatatctatgaaaagcaatcagccccaaaagaa
aaggacaaatccagcatccagtgccttgagtgctatgacccaaatgtgtatatagggacc
aaaaatgcaacagtccagcatctcatccttctcagtagcacaaatggagacctaagtcct
ggccagagcaaattcagagagggtaggttgagaaaactaggctcaagcaaccatgtagcc
caacttagggtagttccacttttcaaccatctgctggtcttgtgggaccggagtgttact
gccctcaacatgttctccttggagcctgttaccaccctgaagaagatccagcacgtgtct
ttctttgaggtgtgcgactcgttgctcgcagcccagacagcatgtgtggagatggtgact
tcctccagccgcaggaaggtgatccagatccacgtcgtgggagtggacaggtgggacgtg
gtaaaggaagtccctctgctccaggaccctgtggccttggcaatagacggtgccagtgtt
tgtgtagccaccagcgacaggtatctcctttgtgatattcggactggaagcagtgaagag
cttttccctcacaatcacagcaggcagcgtgttattgttacctcagtgggacgaggggaa
ttccttctgaacggacctgaatctttgggcatgtttgtgatgaagacagggatatgccag
cgccctcccctgcagtggcctcaggaggtgctggcagccggagtgtgtttcccttacatc
ctaaccctagagccccaagtgctgtctgtctacagcatggtggatcagcagatcaaacag
actgtgggtctcagcggagcaacgggtctgctctccacatcagatggtgtgttagtgttc
acagagagagacattttcagcctgcgtctggtgccactcgatcagcagatccaggcactt
gtcaggcatgagaggatcgaggaggccttgttactgctggacggagttcaaggccactgt
ccatgtgactcatacaaggagctgcagaaggccatcacttgcctggctggatttgttcat
ttttaccgggagggtttttccgaggccaaagaattattcattacaggtgagctggacccc
agagaaatcattcacctctaccctgacatgcagtcgtgtctcagtgaggactttaaatcc
cagctcgatcaagtgaacaagggcagggatcttcaggtcctttgccaagagaacaggaac
acatttcatcattacctggccttcctgggagattttcttagagcagtcaggggaatggag
caaggcctgaagtgtgctcaggaggtggactgcgccctcctgaggctgtacttagaactc
ggagacactgaaaatctgcagcagcttgtggcgtctcccaatgagtgcgggctggacaac
tgtgttcctgttttggagcaacacaacagattttttgcattaggttccctctatcaaagc
aatggacatcaaattgatgcaattgagacttgggtgaaaattgcagatggtttccacaaa
gacccctcttgctcagatgtatatggacacatagtgtggactctcagtcagctgcaagac
agagatgctgtgtggacatttgcagactggactcttcagagaaaccaggagataggggtg
caaattttcaacaagcgtccaccagatggtcaatttgaagctcaaaacgtccttgctcta
ttggagaagtacccactggcgttgcttttgtatcttgagttcttaatccatgatttgaac
agtaaggaggagagacatcacaaccgtctggccctggcatatgttactcagacgctgcaa
gaggaagaaaaagcagatttgaggaggaccagaggaaagttgcagcagctgctatgggaa
tccaaatgctatgatgtctccactgtatatgagagagtcaagtcagcaaccctgcacata
gagaaagccattctcctcggtaggaccggtgaacactgtaaggcactgcaagtgcttgtt
caccaggaaggggacctgcaggctgcagaggcctactgctgcagggctgcccagggccgg
gactcacagttcaggcagaccctgctgctcacgctgctccaaatctacctgagctctgag
gcgcttaccagcgctgccgtggatctgctcaacaacaaccctcgggtctttgtggcagag
aagatcatccagctcctgcctgattcctggtctattcaagtggtctcccagttcttagtt
agatctctcagagagtccttccaccagcggcagatggcgaggctgcagaaggctttgggc
caggcagagtgcatgcggcacaaagccatttggcagatgcaggcctcaaataaaaagttc
agactcgacaagggacagaagtgcaaggtttgtcagagagaccttgcagagccacaattt
gcctgtaacctccacggtgagctgatgcacacaagctgcactggctattcatcatcgtga
DBGET
integrated database retrieval system
