Etheostoma cragini (Arkansas darter): 117936745
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Entry
117936745 CDS
T07493
Symbol
jmjd1cb
Name
(RefSeq) probable JmjC domain-containing histone demethylation protein 2C
KO
K11449
jumonji domain-containing protein 1C [EC:1.14.11.-]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ecra03036
]
117936745 (jmjd1cb)
Chromosome and associated proteins [BR:
ecra03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
117936745 (jmjd1cb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tudor_KDM3B
PWWP_KDM3B
DUF7030
JmjC
C1_2
zf-C5HC2
FYVE
Motif
Other DBs
NCBI-GeneID:
117936745
NCBI-ProteinID:
XP_034715995
LinkDB
All DBs
Position
21:complement(17627484..17745792)
Genome browser
AA seq
2928 aa
AA seq
DB search
MAVEARPELVGKRFLCVSGDEPPEISDFGRWPWRTGVIRAVNHRDSDNPDLTAYVEFDDQ
EWENREWVKVFEDFQLFLLEHQLVWAKRKEGAGGAGAGGGAGGVLQGTKAKHVQWPALAF
KPVVGKSLLSSVTAVEFLLDRQLDFLSDHSAFQPYQDEVDSQNPVLRDNHQLHEEVRGWL
KDQKVQEIFMQGPYSLNGYRVRVYRQDSATQWFTGIITHHDLFSRNMVVMNDQVLEPQNV
DPSMIQMTFLDDVVHSLLKGENIGITSRRRSRSSQNNNTAHMAGGRPSGTTGNTQSHYTR
AQANSPRPIMTSSGPNPKGSQVTQASQQQSQSQQSQQPASQSHHSPSNSGREQREQRNSR
SSRRKGSDSSVPEEDKDRREETPGRDSKAKAKQALNKRRKGEEEEKKAGLKRLKTDMTSD
LSESSDSENPHNKRTSGSSSSSSSSSSSSSSSSSSSEPNSENELKTRNTDAKQSGVSKKE
EEEKPLAQATKMNNSSSLIGRLSPWVELQVVEDSKKGVVKETGKMTTKEEEELVAVTQIT
QSPRQQTPLMSDTVQGGSLENSKNTVKASSRSQTPLLSHLGGSSVIDITDDAQATVHQES
SEAVSALLASQKAESTALSPYLPLNPSPVSSPPVPPSPSPSEGGRRTDIEPPLQQQQSIM
GGGMTAARSLGNKIEFAPSEVIRPVTSMVQNVVLVEKEKTVLPLHLHHHQQQQQQPQHHH
HHQHTQQQQHYTSIHPSIKSPSLSEETRKHPQQPQQPTPHKMNTVLPPDLTKSRMSPNPA
QLDSLKQKPQHPNNCQSHPYPNTNPADLLKAKPHPGLLDISKPKPNTSPEVSKHKIQRYP
DTPPPPIGRLSAKVEPAEPPRSGFKPMPARSESGGVGASVSSSTKSPLIIDKNETFTIYR
DPALVRPDAENSVSATVSSNHVAAYLHPHLHTLHSPSPHSPCLTSSSHSHTTSHLLAPPH
TSALPHPHLLPPGVLPAMPPPSASLLGGHPRLDSPSGLGHLALPHAAAAHQQQFLQGQGP
PPPPLLAQAHSGAAGLGLYPILWQYPNGTPTSYPPGLNLPPTAKWVHPENPVTLNSEASL
RRNTASPWLHQGAGSAGDGLGLLSHVPVRPASADAHRPPVKINTHTSPPLSKSNMNAHKE
DVDKKGFVDPIRTLTLAQLKQEQTDRSRTPTGKDAHLRRLYLDPNCKARQVNTQDAVQAA
DRASKYKEENRQILKESIEVAPFTAKIQRSSDPGMDRDRERSRDPAFPVRLPALASPGPK
VGHIHPHVIQSEKSNYFTTLSNSVVNEPPRLYPSKELSSYYEKVSGGAPAVVTSVGATVP
SQGALSLGSYSPKASLSKPPPLIKHQPEGGEGLAGKITEQLSQQVTLVQQHHSHHTGIDR
IERRSPAISPSSSMPLSSSSAPNHHHHHHHHHQTQQQQQQQQQQQQQQQQQQHHQQQQQH
QQQQQLRAMPSLHRAPVFHPPTQHALERREAAEREREREKEREREREKAVYGGRLSPPTL
TPIQPVSLVAAGSKTSVEQQKPPTLLPELRDVKGHRNAAVVTSVASAISGEIMTSSTDAW
RVGEMIQERRGSFSAEKGVSRGKPQSAMASVIVRPSTAIKYNSPPGANKSGAMLLTELPQ
GRFYPSKLQGECFRLGESVREAVAGRVIQPNSNLDDMCVQYKNTYMRGMPGTMGASITNS
VCRTAISAASAFGVQSISGTAISELGYAVSSRGEISAHNTGFCGRVPSHSGLGEYQEGLG
SRNTSPGGSLPPSSPAGPPQPSPSLTPTPSSISGSSQPYSSSFVHLKKHKAALAAAQSRS
NFSTVPTSIATGNCFLPVDSVDKTPIHNSPPPPLSQASSSSVDSSSGSSASGSTTTGKSS
PLPNGQISGSASTSSGQPSNYHKLKKAWLTRHSEEDRNTTATICSTSTKPEKLPSITTPA
TTTTTITSTSNTSAMAEMIKPCTVNLSASTSSEVEMSKENASKVERERQLEEKVGGGGGG
EERKATPSSRRGNKRSYESGSESGGDDSDASESKMEGRAKRQPKPTYKKKQNDMAKRKGD
NEKEEDDVKPNGIFRSAREKTKLKLASSNGIPRSVLKDWRKVKKLKQTAESFLQDDSCAE
IGPNLQKCRECRVVRSKKGEEPTHSPVFCRFYYFRRLSFSKNGVIRMDGFSTPDQFDDEA
LSLWVPGLMEESHLDQTTAKYILSFIGDKFCQMVVTENTAATWVKKDAKLAWKRAVRGVR
EMCDACEATLFNIHWVCQKCGFVVCLDCYKAKERRSSKDKELYGWLKCVKGQPHDHKHLM
PTQIIPGTVLTELVTSMHSMRDKHNIKSHCSCTNKQNLLTKLPATNGVSQVLQNVLNHSN
KLSLVKAEPGSQQNSDQGGTKAETNGGRGGGSSPGSDAGSAPVTPPESQSPLHFLADLAE
QKSREEKKENKSVLLGKSVKEDKDVDSLEVLQQCKTTSLVANSTEQGSTLRDLLTTTAGK
LKLGSTDAGIAFAPVYSTASQTGKGGRTMPNILDDIIASVVENKIPASRQSITTKLSIKQ
EPVTPGNNNNNNIPVPAITEDARPDRKKSAHVTAAGPEESTNQYPDIPHCWLNNRRLLWL
KDHSNQNNWKLFRECWKQGQPVLVSGIHKRLNGGLWKADSFNQEFADHQGDLLNCKDQVV
SNSGIKEFWDGFEDITKRPKSKDGEPMVYRLKDWPSGEEFMALMPSRYDDLMKNLPLPEY
SDPEGNLNLASHLPSFFVRPDLGPRLCCAYGVAASQDQDFGTANLHVEVSDVVSVLVYVG
VAKGNGVLSKTGVLKRLEEEDLDEGVRRRLKDSSETPGALWHIYLNKDMDKVREFLHKEQ
GLDVSLDQDPIREQGLYLSRKQRQRLLDEHGVQGWTVVQFLGDSVLIPAGAMHQVQNLHS
CVQVINDFVSPEHVANSFHLTQELRPNKEEVNYEDKLQVMDHSTIHCH
NT seq
8787 nt
NT seq
+upstream
nt +downstream
nt
atggcagtcgaggctcggccggagctggtcgggaagcgattcctctgtgtcagcggggac
gagccgcctgaaataagcgacttcggtcggtggccgtggaggactggagtcatacgagcc
gttaatcatcgtgacagcgacaaccccgacctgacggcatacgtggagtttgacgaccag
gagtgggagaacagagagtgggtgaaggtctttgaggatttccagctgtttctgctggag
caccagctggtctgggccaagaggaaggagggagccggaggagcgggagcaggtggagga
gcaggaggcgtgctgcaaggaaccaaggccaaacacgtacagtggcctgccctggcgttt
aagccagtggtggggaagagcctgttgtcgtcagtaacagcggtggaattcttgttagac
cgacagctggacttcctgtctgaccattcggccttccaaccctaccaggatgaggtggac
agtcagaacccagtgttaagagacaaccaccagctccatgaagaagtgaggggctggctc
aaagaccagaaggtgcaggaaatttttatgcaaggtccctattcactgaatggctaccgc
gtgcgtgtgtacagacaagactcggccacccagtggttcacgggcatcattacacaccac
gacctcttcagtcgaaacatggtcgttatgaatgaccaggtgctagagcctcagaacgtg
gacccgtctatgatccagatgacctttctggatgatgtggttcactccctgctgaaagga
gaaaacatcggcatcacttccagaagaaggtcacgatccagccagaacaacaacactgcc
cacatggcgggagggagacccagcgggaccactggcaacactcagagtcattacacacga
gcccaggccaacagcccccgccccattatgacctcatcaggccccaacccgaaaggttcc
caggtgacgcaggcctctcaacagcagagccaatcacagcaaagccagcaaccagccagc
caatcgcaccactcgcccagcaacagtgggagggagcagagagagcagcgcaactctcgc
tcctccaggaggaaaggatccgacagcagcgttccagaggaggacaaggacaggagagaa
gagaccccagggagagactccaaggccaaggccaagcaggcgctgaacaaacgcaggaag
ggcgaggaagaggagaagaaggcaggtcttaagaggttgaaaacagacatgacctctgac
ctgtcagagagcagcgactcagaaaacccacacaacaagaggacctcaggctcctcttcc
tcctcatcctcctcctcctcctcctcctcctcttcgtcctcctcctcagagcccaactcc
gagaatgagctaaagactcgcaacactgatgcaaagcaaagcggtgtttccaaaaaagag
gaggaggagaagccgctggcgcaggccaccaaaatgaataattcttcatctcttattggt
cgcctgtccccgtgggtggagcttcaggtagtggaggacagcaagaagggcgtggttaag
gaaacgggcaaaatgacaacgaaggaggaggaggagttggtcgcggtaacacagatcacc
caatccccgcggcaacagacgcctctgatgtccgacaccgttcagggtggcagtttggag
aacagcaagaacactgtgaaagcgtcatctcgatcccagacgccattgttgtcccacctg
ggaggcagcagtgtaatcgacatcacagatgatgcccaggccacggtgcaccaggagagt
tcagaggcagtgtcagccctgctcgcctcccagaaggccgaatccacggccctctcacct
tacctgcccctcaacccctcccccgtctcctcgcctcccgtccctccgtctccgtcacca
tcagaaggaggccgcaggacggatattgagcctcccttgcagcagcagcagagcattatg
ggaggtggcatgacagcagccaggagcttaggcaacaagatagagtttgctccctctgag
gttatcaggcctgtcacatcgatggttcaaaatgtggtgctggtggagaaggagaaaact
gtccttcctcttcatcttcatcatcatcaacagcagcagcagcagccgcagcatcatcat
catcatcaacacacacaacaacagcagcactacacatctattcaccccagcattaagagc
ccgtctctgtccgaggagacgagaaaacacccacaacaaccacaacaaccgaccccccac
aagatgaacacagtgctcccccctgacttaaccaaatctagaatgagccccaacccagct
cagcttgactccctcaaacagaaaccccagcaccccaacaactgtcaaagccatccctac
cccaacacaaacccagctgaccttctcaaggctaagccccacccgggcctgctggacatc
tctaaacctaaacccaacacctcccccgaggtctctaaacataaaatacagaggtaccca
gatacccccccacctccaataggccgtttgtcggctaaagtagaaccagctgagcctccg
cggtctggtttcaagccgatgccggcacggtcggagtcggggggagtcggtgcaagcgtc
agtagcagcaccaagagtcccctgatcatcgataagaacgagaccttcaccatttacagg
gacccggcgctggtccgcccagatgcagagaactctgtctcggcaaccgtctcctccaac
cacgtggcagcctatctccacccccacctgcacacccttcattccccctcccctcactcc
ccctgtctcacgtcctcatcccactcccacaccacctcccacctcctcgccccccctcac
acctctgccctgccacacccgcatcttttaccccccggagtgctcccggccatgcctcct
ccttcagcatctctactcgggggccaccctaggctcgactcccccagcgggttgggccac
ctcgcccttcctcacgcagcagccgcacaccaacagcagttcctacagggtcagggccct
cctccaccccctctactagcccaggctcacagtggggcagcaggcctgggcctttacccc
atcctctggcagtaccccaatggaacaccaacctcctaccccccagggctcaacctgccc
cccacagctaagtgggtccacccggaaaatcctgtcactttgaattcagaggcctctctc
aggaggaacacagccagtccgtggctgcaccagggtgccggtagtgctggcgacggtctg
ggtttgctgagccacgttcccgttcggccagccagcgccgacgcccaccgtcccccggtc
aagatcaacacccacacaagccctccgctgtcaaagtctaacatgaacgcacataaagaa
gacgtggataagaagggcttcgtggatccgatcaggacgttgactttggcccagctgaaa
caggagcagacagacaggagtcgaacccccacagggaaagacgctcatctacgccgccta
tatctggaccccaactgcaaggctcgccaggtaaatacacaggatgcagttcaggcagca
gaccgagccagtaaatacaaagaggagaatcggcaaatcctgaaagagagcattgaggtc
gctcccttcaccgctaagatccagcgctccagtgacccagggatggatagggaccgagag
aggagcagagatccagccttccctgtgcggttaccagctctagcgtccccaggccccaag
gtcggccacatccatccccacgtcatccaatcagagaagagcaattacttcaccacgctt
tccaacagtgtagtaaatgagcctccaagactttacccctccaaggagcttagctcttac
tatgagaaagtgtctggcggagctccagctgttgtgaccagtgtcggggccactgtgcca
agccagggagctctgtccctgggcagctatagccccaaagcatccctatccaagccccct
cccctcataaagcaccagccagagggaggagagggtctggcagggaaaatcactgagcag
ctcagccagcaggtgacacttgtccaacagcatcattctcaccacaccggtatagacagg
atagaacgccgcagccctgccatttccccttcctcctctatgcctctctcttcctcctca
gcacccaaccaccaccatcaccaccaccaccaccaccaaacacaacaacaacaacaacaa
caacagcagcagcagcagcagcagcagcagcagcagcaccatcaacagcagcagcagcat
cagcagcagcaacagctcagggcaatgccatctctccaccgagcacctgtgttccatccg
cccacacagcacgcactagaacgcagagaggctgcggaacgagagagggagcgggagaag
gaaagagagcgagagagggaaaaagcagtttatggtggacgcctgtctccgccaacactc
acacccatccagccagttagcttagtggcagctggtagcaaaacttcagtggagcagcag
aagccgcccacgctgctgccggaactcagggacgtcaaaggtcatagaaacgctgccgtc
gtcacctctgtggcctcggccatcagtggggagatcatgacttcatctacagacgcgtgg
agagttggagagatgattcaggaaagacgaggctcattctctgctgagaaaggagtgtca
aggggcaagccccaatccgcaatggcatccgtcattgtgcgtccatcgacagctattaag
tataacagtcctcctggtgctaacaaatctggtgctatgctcctcacagagctcccccag
gggaggttctacccatccaagcttcagggggaatgcttcagactaggggagagtgttaga
gaagctgtagctggcagggttatccaacccaactcgaacctggacgatatgtgtgtccag
tataaaaatacttatatgcgtggcatgccgggaactatgggggccagtatcacaaactct
gtgtgcaggactgccatttcagccgcatcagcttttggtgtacagagtatcagtgggaca
gccatctctgagctgggctacgctgtctcatctcgaggagagatctcagcccataacact
ggcttttgtggccgggtgcctagccactcaggactaggagagtaccaggaggggttaggc
tcacgcaacacatcaccaggggggtctctgcctccctctagtccagcagggccaccccaa
ccgagtccaagtctcaccccaacaccttcctccatttctggctccagtcagccttactcc
tcctccttcgtccacctaaagaagcacaaagcggccttggctgccgcccaatccagaagc
aacttctccactgttccaacatccatcgcaactggaaactgcttccttcctgtggattca
gttgacaaaacccccatacataattcaccccctccacccctcagccaagcctcatcgtct
tcggtcgacagcagtagcggcagctcggcaagcggtagcacaacaacgggcaagtccagt
cccctgcccaacggccagatctctggatcggcctcgacaagcagcgggcagcccagtaac
taccacaagctgaagaaagcctggttaacgcgtcactcagaggaggacaggaacacaact
gccactatatgctccaccagtactaaaccggagaaactgcccagcatcaccacccccgcc
accaccaccactaccatcaccagcacaagtaacacctcagccatggcggaaatgatcaaa
ccctgtacagtcaatctcagcgcctccacctccagtgaggtggagatgagcaaagaaaat
gcaagcaaggtggagcgagagaggcagctggaggagaaggtgggaggaggaggagggggg
gaggagaggaaagcaactccctcatctaggcgaggaaacaagcggtcatacgagtcgggt
tcagagagcgggggagatgactccgacgccagcgagagcaaaatggaaggcagagccaag
cgtcagcccaaacccacctacaagaagaagcagaatgatatggccaaaaggaaaggagac
aacgaaaaggaggaagatgacgtgaagcctaatggcatcttcagatcggcccgagagaag
actaaactcaaactagccagcagcaatgggatcccccgctctgtcctgaaggactggagg
aaggtgaagaagctgaagcagaccgcggagtctttcctgcaggatgactcgtgtgctgaa
attggacccaacctgcagaagtgtcgggagtgcagggtggtccgcagcaagaagggagag
gagccgacacattccccagtcttctgtcgcttctactatttcagacggctttccttcagt
aaaaatggagtcatccggatggatggcttctccactccggaccagtttgatgatgaagca
ctgtccctatgggtccctgggctgatggaggagagccacctggaccaaaccacagccaag
tacatcctcagcttcataggagacaagttctgtcaaatggttgtgactgagaatactgca
gctacctgggtcaagaaggatgccaagctggcctggaagcgagcggtgaggggggtgagg
gagatgtgtgatgcttgcgaggcaacactcttcaacatccactgggtctgtcagaaatgt
ggcttcgttgtctgcttggactgctacaaggccaaggagagaaggagctccaaagataag
gaactatacggctggcttaagtgtgtgaaaggccaaccccacgatcacaaacacctgatg
cccacacagatcatacctggcacagtgctgacagagttggtgacttccatgcactctatg
agagacaaacacaacatcaaatcccactgctcctgcaccaacaagcagaacctccttacc
aaactaccagccaccaacggagtctcacaggttctgcagaacgtcctgaaccacagtaac
aaactgtccctggtgaaagctgagccgggctctcagcagaactctgaccagggaggaacc
aaggcggagactaacggagggcgcggtggaggaagcagtccaggcagcgacgcgggaagc
gctcctgtcaccccgcccgagtcccagtcccctctgcacttcctggctgacctggcggag
cagaaatccagggaggagaagaaagaaaacaagtctgtgctgcttggtaaatcggtcaag
gaggacaaggacgttgacagcctggaggtcctgcagcagtgtaaaaccacatcactggtg
gcaaatagtacagagcagggctccacactcagagatctgctcaccaccacagcagggaag
ctgaagctgggctccactgatgcaggaatcgcctttgcaccagtctactctactgcgtca
cagactgggaaaggtgggaggaccatgcccaatatccttgatgacatcattgcttcagta
gttgagaacaaaatccctgccagccgccagagcatcaccaccaaactgtcaatcaagcag
gagcctgtcaccccaggcaacaacaacaacaacaacatccctgtccctgctattactgag
gatgccagaccagacaggaagaagtcagcgcatgttactgcagcagggccagaagaatca
accaatcagtatccagacattccccactgctggttaaacaacagacggttactgtggctc
aaagatcacagcaaccagaacaactggaagctgttcagagagtgctggaaacaaggacag
cctgtgttggtgtcagggatccataagcgactgaatggcggcctgtggaaagctgactcc
ttcaaccaggagtttgcagaccatcagggagacctcctgaattgtaaagaccaggtcgtt
tccaactctggaatcaaggagttctgggacggatttgaggacatcactaagcggcccaag
tccaaggatggagaacctatggtctacagactgaaggactggccgtcgggagaggagttc
atggccctcatgccctcaaggtatgatgacttgatgaagaacctgccactgccagagtac
tcggatccagagggcaacctgaacctggcctcccacctgccatctttctttgtcaggcca
gatctggggccgagactatgctgtgcctacggtgtagctgcatctcaggaccaggacttt
gggactgccaacctccatgtggaagtctcagatgtcgtctctgtgctggtctatgtagga
gtagccaaaggcaatggagtcctgtccaaaactggagtgttgaagcgcctagaggaggaa
gatctagatgagggggtccgaagaagactcaaagactccagtgagacaccgggggctctg
tggcacatctacctcaacaaagacatggacaaagtccgagagttcctgcacaaggagcag
ggattggacgtgtcgctggaccaggacccaatcagagagcagggcttgtacctgagcagg
aagcagcggcagcggctgctggatgaacacggagtccagggctggactgtagtccaattc
ctgggagactctgtacttataccagcaggggccatgcaccaggtccagaacctccacagc
tgtgtccaggtcatcaatgactttgtgtctcccgagcacgtggccaactccttccacctg
acccaggagctccggcccaataaagaggaggtcaactacgaggataaactacaggtgatg
gaccacagcacaatccactgtcattga
DBGET
integrated database retrieval system
