Etheostoma cragini (Arkansas darter): 117936971
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Entry
117936971 CDS
T07493
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117936971 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecra03400
]
117936971 (msh2)
DNA repair and recombination proteins [BR:
ecra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
117936971 (msh2)
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
117936971
NCBI-ProteinID:
XP_034716447
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Position
21:5718359..5728849
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AA seq
932 aa
AA seq
DB search
MAVQPKQNLSMDSAGEHGFLNFIFSMPEKPDTTFRIFDRNDYYTVHGKDAIFAAKEVFKT
NGVIKYLGSGSRKLESVCLSKLNFEAFVKDLLLVRQYRVEVYKNHSKSSKEHDWKIEYKA
SPGNLTQFEEILFGSGTGAVGCAGVVAVRFTTGADGQRVVGVGYVDAAQRTMGVCEFPDN
EIFSNLESLLVQISPKECLLAQGESNSDANKLREVVQRGGMLVSDKKRSEFNSKDMVQDL
NRLLRAKRGETVASNTLPELDKQVAMSCLAAVVRFLDLLSDESNFNSFSLTTLELGQYMR
LDNAAVRALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLIDVTKIEERLD
LVESFVCDSELRQSCQEDLLRRFPDLHRLAKKFHRHSATLQDCYRVYQAVSHVPALVMAL
ERYSGSYQVLLEAVFLSPLRDLQTDFVKYQEMIETTLDMNQIDHHEFLVKASFDPVLSEL
REKMDALEKSMQGVLNSAARELGLDAGKTVKLESNAMLGFYLRVTCKEEKSLRNNKKFTT
LDVQKNGVRFTNGKLSSLNEDYGKNKEEYEEAQNAIVKEIINIASGYVDPLQALSDVIAQ
LDAVASFAVASVSAPVPYVRPRLLADGCRRMELQQARHPCMETDADTAFIPNNISFVQGE
KNFYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCEKAELSVIDSVLARVGAGDSQVKG
VSTFMSEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWGISEHIASKISCFCLFA
THFHELTALAAQQPTVHNLHVTALTSHNTLTMLYRVKSGVCDQSFGIHVAELACFPPSVV
AMAKEKAEELEEFQEPAGELEDEPESKRRRTDKQVGEKLIQDFLEKAKSLPAATMSDEEV
KAALVRMKQELIAKNNPYIKELLSRCVPAKTP
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaaacaaaacctgtctatggacagtgctggcgaacatggcttttta
aacttcattttctccatgccggagaaaccggacactactttcagaatattcgaccgtaac
gattactacaccgttcacggaaaagatgccatatttgcagcgaaggaggtgttcaagacg
aacggggtcatcaaatatttaggctcagggagtcgcaagttggagagtgtgtgcctgagc
aagctgaactttgaggcctttgtgaaagacttgctgctggtgaggcagtacagagtagaa
gtgtacaagaaccacagcaagagcagcaaggagcacgactggaagatcgagtacaaggcc
tctccaggaaacttgactcagtttgaggagattctgtttggcagtggaaccggagcagtg
ggttgtgcaggagttgtagctgtgcggtttactacaggagctgatggtcagcgtgtggtt
ggggtcggctatgtggacgcagcccagaggacgatgggagtgtgtgaatttccagataac
gagatcttttccaacctggagtcccttcttgtccaaatcagccccaaagaatgtctcttg
gcccagggtgaatccaacagtgacgccaataaactacgggaggtggtacagcgtggcggc
atgctggtctctgacaagaagagatcagagtttaatagcaaggacatggtccaggacctc
aacaggctgctgcgggccaagagaggagagactgtggcgagcaacacgctgcctgagctg
gacaaacaggtggctatgtcgtgcttggctgcagtggtgcgttttcttgacctgctctct
gacgagtccaacttcaactccttcagcctgaccacactggagctgggtcagtacatgagg
ctggacaacgctgccgtgagggctcttaacctcttccagggatctcctgatgacaccagt
ggagctcattcattggccggtctgttgaacaagtgccgtacacctcagggccagcggctt
gtcaaccagtggatcaaacaacctcttatagatgtaaccaaaatagaggaaaggctggac
ctggtggagagtttcgtgtgtgactctgagctcaggcagagttgtcaggaggacttgctg
cggcggtttcctgatcttcaccgtctggccaagaagttccaccgtcactctgcaacgctg
caggactgctaccgcgtctaccaggctgtgagccacgtcccggccctcgtcatggccctg
gagagatactcaggtagctaccaggttctgttggaggcggtattcctttctcctctcaga
gacctgcagacagactttgttaagtaccaggagatgattgaaaccacactggacatgaac
cagattgaccaccatgagttcttggtgaaggcgtcgtttgatccagtgttgagtgagctg
agagaaaagatggacgcgctggaaaagagcatgcagggggtgctgaacagcgcagccaga
gaactgggtttggacgctggaaagactgtgaagctggagtcaaatgccatgctgggtttt
tacctcagagtcacatgcaaagaggagaagagtctgaggaacaacaagaaattcaccacg
ctggatgttcagaagaacggagtgcgcttcacaaacggtaagctgagttctctaaacgag
gactacggcaagaacaaagaggagtatgaggaggcccagaatgccattgtcaaagaaatc
atcaacattgcttcaggttacgtggatcccctccaggcgctgagcgacgtgatagcgcag
ctggacgcggtggccagttttgctgtggcgtctgtctctgctcctgtgccgtatgtcagg
ccccggctgttggcggacggatgcaggcgcatggagctgcagcaggccagacatccctgc
atggagacggacgcggacactgccttcatacccaacaacatctctttcgtccagggagag
aagaacttctatattataacaggaccaaatatgggcggcaagtcgacatttatccgtcag
gtgggtgtgatcgctctaatggctcagatcggctgctttgtgccatgtgagaaggcggag
cttagcgtgattgacagtgtcctggccagggtgggagcaggagacagccaggtcaaagga
gtgtccacctttatgtccgagatgctggagacggctgccattctgcgctcggccacggag
aactcgctcatcataatcgacgagcttggcagaggcacgtccacatacgatggcttcggt
ctagcctggggcatcagcgaacacatcgcctccaaaatcagttgcttctgtctgtttgcc
actcacttccatgagctgacagcgctggcagcgcagcagcccaccgtccacaacctgcac
gtcacagccctgacctctcacaacacactcaccatgctgtacagggtcaaatcaggtgta
tgtgaccagagttttggaatccacgttgctgagttggcatgcttcccgccatcggtggtt
gccatggccaaggagaaggcagaggagctggaggagttccaagaacctgcgggggagttg
gaggacgagcccgagtccaagagacgacggacagacaaacaagtgggggaaaagctgatc
caggacttcctggagaaggcaaagtcactccctgctgccactatgagtgatgaagaggtg
aaagcagcactcgtgagaatgaagcaggagcttattgccaaaaacaacccatatatcaaa
gagctcctttcacgctgtgttcctgcaaaaacaccttga
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