Etheostoma cragini (Arkansas darter): 117937096
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Entry
117937096 CDS
T07493
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1 isoform X1
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
117937096
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ecra04040
]
117937096
Ion channels [BR:
ecra04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
117937096
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
Motif
Other DBs
NCBI-GeneID:
117937096
NCBI-ProteinID:
XP_034716659
LinkDB
All DBs
Position
21:7444888..7538199
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AA seq
1278 aa
AA seq
DB search
MSKREKFNPDPSIHISKMNVIIPFSSDVPCDSNGQRMWWAFLASSMVTFFGGLFIILLWR
TLKYMWTVCCHCNAKKKDVHRITTGDGIIKRAGKDDPAASEVGWMTSVKDWAGVMISAQT
LTGRVLVVLVFALSIGALVIYFIDSSDDIESCQNFYKDFTLQIDMAFNVFFLLYFGLRFI
AANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSWLGLRFLRALRLIQFSEILQFLNILKT
SNSIKLVNLCSIFISTWLTAAGFIHLVENSGDPWENFQNSQALSYWECVYLLMVTMSTVG
YGDVYAKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGSYSAVNGRKHIVVCG
HITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKRHFTQVEFYQGSVLNPH
DLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAHL
LNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSFIKIEEDTWQKYYL
EGVSNEMYTEYLSSAFVGMSFPVICELCYVKLKLLLIAIEYKSDQRECSTLINPGNHMKM
QEGTLGFFIASDAKEVKRALFYCKACHDDITDPKRIKKCGCKKLIYSKKAAYKKMRLACC
FDCGRSERDCSCMPVNVRCNMDSPQRDIPLSAVSVNDCSATLRASKNSYNGYIKSIEEDQ
QSALSPKKKQRNGGMRNSPNSSPKIMRHDPLLIPGNEQIESMDDNVKKYDSTGMFHWCPS
KDIEKVILTRSEAAMTVLSGHVVVCIFGDVKSALIGLRNFVMPLRASNFHYHELKHIVFV
GSLEYLKREWETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSANQNNIDDASLQD
KECILASLNIKSMLFDDSIGVLQANSQGFTPPGMDRSSPENSPVHGLVRQTSVTTGANIP
IITELAPLAKPGKKLPVISFSQDTSSGTSIQIITELVNDSNVQFLDQDDDDDPDTELYLT
QPFACGTAFAVSVLDSLMSATYFNDNILTLIRTLVTGGATPELEGLLAEENALRGGYSTP
QTLANRDRCRVAQLALYDGPFADLGDGGCYGDLFCKALKTYNMLCFGIYRLRDAHLNAQS
QCTKRYVITNPPYAFELVPSDLIFCLMQFDHNAGQSRTSLSHSSHSSHSSSKKSSSVHSI
PATNRTNRAKSRDSRDRQNATRMNRVGQEKTWFTDEPENTHLRTMQIKPVNKLAINQVSQ
NKSTSSLIPPIREAEDEC
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagagggagaaattcaacccggatccgtccattcacatatccaagatgaatgtc
atcattccgttttcatcagatgtgccctgtgacagcaacggccagcggatgtggtgggct
ttcctcgcctcctctatggtcactttcttcgggggtctcttcataatcctcctgtggaga
actctcaaatacatgtggactgtgtgttgccactgtaatgccaaaaagaaggatgtccat
cggatcaccacaggtgatggcatcatcaagcgcgccggcaaggatgacccggcggccagc
gaggtgggctggatgacttcggtcaaagactgggccggagtcatgatatccgctcaaaca
ctaacgggaagagtcctggtggtgctcgtatttgctctcagcattggagcccttgttata
tacttcatagattcttctgatgatattgagtcctgtcagaacttctacaaagacttcacg
ttgcagattgacatggctttcaacgtgttcttcttgctgtactttggcctccgcttcatt
gctgcgaatgacaagctgtggttctggctggaggtgaactcggtagtggacttcttcacg
gttccgccggtgtttgtgtcggtgtatctgaacaggagctggctcggcttgaggttttta
agggccttaaggttgatacagttctcagaaattttacagtttttgaatatactaaagaca
agcaactcaataaagctggtgaacctgtgttcaatcttcataagcacatggctaactgca
gcaggatttattcatttggtggaaaactcaggggatccttgggaaaacttccaaaattcc
caggcactttcctactgggaatgtgtctacttactcatggttactatgtccactgttggc
tatggagacgtttatgcaaaaaccaccctgggtcgcctgtttatggtcttcttcatcctc
ggtggtttggccatgtttgcgagctacgtccctgaaatcatagagttaataggaaaccgc
aagaaatatggtggttcctatagtgctgttaatgggagaaagcacatcgtggtctgtggt
catataacacttgagagtgtgtccaactttctaaaagacttcctacacaaggacagggat
gatgtcaatgtagaaattgtttttctccataatatttcccctaatcttgagctggaagcc
ttgttcaagcgccacttcactcaggtggagttttaccaaggatctgtcctgaacccacac
gacctggccagagtcaagatcgaatcagctgatgcctgtttgatcttagccaacaaatac
tgtgcagaccctgatgccgaggatgcatccaacatcatgagagtaatatctatcaagaac
taccatccaaagatcagaataatcactcaaatgttgcagtaccacaataaggcccacctt
ttgaacatcccgagctggaactggaaggaaggagatgatgctatttgcctggcagagcta
aaactggggttcatcgctcagagctgcctggctcagggcctctccaccatgctggccaac
cttttctccatgaggtccttcatcaagattgaggaggatacttggcagaagtattacctg
gaaggagtatccaatgagatgtacactgagtacttgtcgagtgcctttgttgggatgtcc
ttcccagtaatttgcgaactctgctatgtgaagctaaagctgctactgatagccatagag
tacaagtctgatcaaagggaatgcagcacactaataaaccctggaaaccatatgaaaatg
caggaggggacattgggcttcttcattgccagcgatgccaaagaagtaaagagggcactg
ttttactgtaaagcctgccatgatgatattactgatcccaaaaggataaagaaatgtgga
tgcaagaaattgatatattccaagaaggctgcctacaagaaaatgagactggcatgttgt
tttgattgcggccgctcagagcgggactgctcttgcatgccagttaatgtgcgttgtaac
atggactcccctcaacgcgacatcccactctctgctgtctctgttaatgattgctcagcc
actttacgtgcctctaaaaatagctataatggatatatcaaatcaattgaagaggaccaa
cagtcggcgttgtcacctaaaaaaaagcaacgcaacggaggcatgagaaattctccaaac
tcctcacccaagataatgagacatgatccgctcctcatcccagggaacgagcagattgag
agcatggacgacaatgtaaagaaatacgactccacagggatgtttcactggtgcccgtcc
aaagacatcgaaaaggtcatcttgacccggagcgaggcagccatgactgttctgagcggc
catgtggttgtgtgtatatttggagacgtgaaatcggcgttgatcggtctccgaaacttt
gttatgcctctgagagcgagcaactttcactaccatgagctaaagcacatcgtatttgtt
ggctcacttgagtatcttaagcgggagtgggagactctacacaattttccaaaggtctcc
attttacctggcacaccgttgagccgggcagatctgagggctgtcaacatcaacctctgc
gacatgtgtgtcattctgtcagccaatcagaacaatattgacgatgcatcactgcaggac
aaagaatgcattttggcgtcactcaacatcaaatccatgctgtttgacgacagcatcggg
gtcttgcaggctaattcccaaggctttacaccaccaggaatggatagatcctctcctgaa
aacagcccagtccatggattagtgaggcagacttctgtcacaactggagcaaatattccc
atcataactgaactagcaccattagcaaagccaggcaaaaaactgcctgtgatttcattc
agtcaggatacaagcagtgggaccagcatacaaataataactgagctggtgaatgattca
aatgttcagttcctggaccaagatgatgatgacgaccctgacacagagttatacctgact
cagccttttgcctgtgggacagcctttgccgtcagtgtgctggattccttaatgagtgct
acatacttcaatgacaatatcctcaccttgatccggacattggtaacaggcggggcaacg
ccggagctggaggggctgctggcagaggagaatgcgctacgtggcggctacagcacaccc
cagacgctggcaaacagggacaggtgtcgtgtggcacagctggccttgtacgacgggccc
tttgccgacctcggggatggtggttgttatggtgacctgttttgtaaagccctgaaaaca
tacaacatgttgtgctttggcatctatcggttgcgagacgcacatcttaacgcacaaagc
caatgtaccaaacggtatgttataaccaatccaccatatgcgtttgagctggtgccctca
gacctgatattctgcctgatgcagtttgaccacaacgctggccagtctcgaaccagcctc
tcccactcttcccattcatcccattcctccagcaaaaagagctcctctgtccactctatc
ccagcgaccaaccgcaccaaccgcgccaaaagcagggactcacgagacagacaaaatgca
acaaggatgaatagagtgggccaagaaaagacatggtttacagatgagccagagaatacc
cacctgaggaccatgcagatcaagcctgtgaataagctcgccatcaaccaagtcagtcag
aataaatccacaagcagcttgattccacccatcagagaagcagaagatgagtgctga
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