Etheostoma cragini (Arkansas darter): 117937362
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Entry
117937362 CDS
T07493
Symbol
col1a1b
Name
(RefSeq) collagen, type I, alpha 1b isoform X1
KO
K06236
collagen type I alpha
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04510
Focal adhesion
ecra04512
ECM-receptor interaction
ecra04518
Integrin signaling
ecra04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117937362 (col1a1b)
04518 Integrin signaling
117937362 (col1a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117937362 (col1a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117937362 (col1a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ecra00536
]
117937362 (col1a1b)
Glycosaminoglycan binding proteins [BR:
ecra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117937362 (col1a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
117937362
NCBI-ProteinID:
XP_034717160
LinkDB
All DBs
Position
21:3786167..3806959
Genome browser
AA seq
1455 aa
AA seq
DB search
MFSFVDIRLALLLSAAVLLARGQGEEDSLFGSCSLDGQLYNDKDVWKPEPCQICVCDSGT
VMCDEVICEDTSDCDDPIIPDGECCPICPDTAVDPPVIPDGNEPTKGDVGPKGDPGPAGP
PGNDGLDGQPGVPGPPGPPGPPGLGGNFSPQMSYVDHSKSSGGGTIPGPMGPMGSRGVPG
PPGSSGPQGFTGPPGEPGEPGASGAMGPRGPAGPPGKNGDDGEPGKAGRPGERGAAGPQG
ARGFPGTPGLPGIKGHRGFSGLDGAKGDAGPAGPKGEPGASGENGIPGAMGARGLPGERG
RPGPPGPAGARGNDGNTGAAGPPGPTGPAGAPGFPGGAGAKGETGPAGGRGNDGPQGSRG
EPGNPGPSGPAGAAGAPGSDGQAGAKGSPGAAGIAGAPGFPGSRGPAGAQGAVGAPGPKG
NNGDHGPSGPKGEPGAKGEPGPAGVQGLPGNSGEEGKRGGRGEPGGAGPRGPPGERGAPG
ARGFPGADGAAGGKGAPGERGANGALGAQGATGESGSPGAPGAPGSKGMTGSPGSPGPDG
KTGPSGAPGQDGRPGPAGPVGSRGQPGVMGFPGPKGVTGENGKPGERGPAGPTGAVGAPG
KDGDAGAPGPSGVAGPAGEKGEQGPVGSPGFQGLPGPQGATGETGKPGEQGGPGEVGSPG
PAGPRGDRGFPGERGAPGIAGPPGGRGAPGPAGNDGAKGEPGAGGAPGGQGAPGMQGMPG
ERGASGLPGAKGERGDAGAKGGDGAAGKDGVRGMTGAIGVPGPQGAQGEKGEPGAVGVAG
PTGPRGAPGERGETGPSGPAGFAGPPGADGQPGAKGESGDTGPKGDAGAPGPAGPVGGSG
PQGPSGPAGAKGARGGAGSPGATGPPGPAGRVGPPGPPGASGAPGPAGQVGKEGARGARG
ETGPAGRPGEAGAAGAPGPAGEKGSPGSDGSPGAPGTPGPQGISGQRGIVGLTGQRGERG
FPGLPGPSGEPGKQGPPGLHGARGPPGPAGPPGLSGAPGEAGREGSAGHDGAPGRDGATG
PKGNRGENGQAGPPGPPGAPGPPGNAGPSGKTGDRGESGPAGSAGPAGPAGVRGPAGPAG
AKGDRGEAGEAGDRGHKGHRGFTGMQGLPGPAGASGDRGPAGASGPAGPRGPSGSNGIPG
KDGVNGLPGPIGPPGPRGRNGEMGPSGPPGPPGPAGPPGPPGSGFDFISQPIQEKAPDPF
RGGGGHYRADDPKVIQDRDMEVDTTLKTLTQRVEKIRSPDGSQKSPVRMCRDLKMSHPEL
KSDLYWIDPNQGSSLDAIKVHCNMETGETCIYPSESSIPMKNWYLSKNIREKKPVWFSES
MTGGFQFQYGSDGADPEDVSIQMAFVRLMSNQASQNMTYHCKNSIAYMDSATGNLKKALL
LQGSNDVEIRAEGNSRFTYSVSEDGCTSHTGTWGKTVIDYKTSKTSRLPIIDIAPMDVGA
PDQEFGVEVGPVCFL
NT seq
4368 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattcggttagcgctgttgctcagcgcagcagtgcttttggcg
agaggtcaaggcgaggaggatagcttatttggcagctgctcattagacggacagttgtac
aacgacaaggatgtatggaaaccagagccctgccagatttgcgtctgtgacagtggaacc
gtcatgtgcgacgaggtgatctgtgaggacacatccgactgcgacgaccccatcatccca
gacggagagtgctgccctatctgccccgacaccgcggtggacccacccgtgattccagat
gggaatgagccaacaaagggagacgttggccccaagggagatccgggtcctgctggtcct
cctggcaatgatggactggatggacagcctggtgttcctggccctcccggcccccccggc
ccccctggccttggcggaaacttctctcctcagatgagctatgttgaccactccaaatcc
agcggcggtggaactatccctggcccaatgggtcctatgggtagtcgtggtgttcctgga
ccccctggctcctctggtccccagggtttcactggcccccctggtgagcccggtgagccc
ggtgcttctggtgccatgggtccccgtggtcccgccggaccccctggaaagaacggagat
gatggtgagcccggcaaagctggtcgccccggtgagcgtggagctgctggccctcagggt
gctcgtggattccccggaaccccaggactccccggcatcaagggacacagaggatttagc
ggcctggatggagctaagggagatgctggacctgctggccccaagggtgaacctggtgca
tctggtgagaacggtatccccggtgccatgggtgctcgtggtcttcctggtgagagaggt
cgccctggacctcctggccctgctggtgctcgtggtaatgatggcaacactggtgctgct
ggaccccctggacctactggacctgctggtgcccctggcttccccggcggtgctggtgct
aagggagagaccggacctgcaggaggccgtggaaatgacggaccccagggatcccgtggt
gagcctggtaacccaggaccttctggacccgccggagctgctggcgccccaggatctgat
ggccaagctggtgctaaaggttctcctggtgctgctggtatcgctggtgctccaggtttc
cctggctctcgtggtcctgctggagctcagggagctgttggtgctcctggtcccaagggt
aacaatggtgaccatggtccctctggtcctaagggagagcccggtgctaagggagagcct
ggccccgctggagttcagggacttcctggcaactccggtgaggagggcaagagaggagga
cgtggagagcccggtggtgctggaccccgtggaccccctggagagcgtggtgcccctggt
gctcgtgggttccctggtgctgatggagctgctggtggtaagggagcccctggtgagcgt
ggtgccaatggcgcattgggagctcagggagccactggtgagtctggaagccccggtgct
cctggcgcacctggatccaagggtatgactggtagccccggaagccccggccccgatggc
aagactggaccttctggtgcccctggacaagatggacgccctggacctgctggccctgtt
ggatccagaggacagcctggagttatgggattccccggacccaagggagtcactggtgag
aatggtaagcccggtgagagaggtcccgctggtcccactggcgctgttggtgctcctggc
aaagacggtgacgctggtgctcctggaccttctggtgtcgctggacctgctggagagaaa
ggagagcagggacctgttggttctcccggattccaaggtcttcctggaccccaaggtgct
actggtgagactggcaaacctggtgagcagggcggccctggtgaggttggatcccctggc
ccagccggaccaagaggcgacagaggtttccctggcgagcgcggtgcccccggcatcgcc
ggcccacctggaggacgtggtgctcccggccctgctgggaacgatggagccaagggagag
cctggtgctggtggtgcccctggaggtcagggagcccccggtatgcagggaatgcccggt
gagcgtggagcttctggtctccccggtgccaagggagagagaggtgatgctggagccaag
ggaggtgatggtgctgctggcaaagatggcgtgcgtggcatgactggtgctattggagtc
cctggaccccaaggtgctcagggtgagaagggtgagcctggtgccgttggagttgctgga
cccaccggtcctcgtggtgcccctggcgagcgtggagagactggaccctctggacctgct
ggatttgctggacctcctggtgctgatggtcagcctggtgccaagggagagagcggtgac
actggacccaagggagacgctggtgctcctggtcctgctggacctgttggaggttctggt
cctcagggaccttctggtcccgctggagctaaaggtgctcgtggtggtgctggatcccct
ggtgctactggtccccccggacctgctggaagagttggaccccctggcccccctggagct
agcggggcccccggacccgctggacaagttggcaaagaaggagcaagaggagcacgcggt
gagaccggtccagctggtcgccctggtgaggctggcgctgctggagccccaggaccagcc
ggagagaagggatctcctggctctgatggatcccctggcgcccctggtacccccggaccc
caaggtatttctggacagcgtggtattgtcggtctcactggacagcgtggagagcgtggt
ttccctggtctgcctggaccatctggtgagcctggaaagcagggtcctcctggacttcat
ggtgcccgtggaccccccggacctgctggaccccctggactgtccggtgctcccggagaa
gctggtcgtgagggatctgccggtcacgatggtgcccctggtcgtgatggagcaactggc
cctaagggaaaccgtggcgagaatggtcaggctggaccccccggaccccctggtgctcct
ggaccccccggaaatgccggcccctctggcaagactggtgaccgtggagagtctggtccc
gctggctctgccggtcctgctggccctgctggtgtccgtggtcccgctggccctgcaggt
gcaaagggagacagaggagaggctggtgaggcaggagacagaggacataagggacacaga
ggattcacaggcatgcagggtctgcccggacctgctggggcttctggagacagaggacct
gctggcgcctccggaccagctggacctagaggaccttctggatctaatggcatccctgga
aaggatggcgtgaacggtcttcccggaccaatcggaccccctggacctcgtggtcgcaat
ggagagatgggaccttctggtcctcccggacctcctggacccgctgggccccctggacct
cccggcagtggatttgacttcatcagccagcctattcaggagaaggcacccgatcccttc
cgtggcggcggcggccactatcgtgccgacgatcccaaggttattcaagatcgcgacatg
gaggtggacaccaccctcaagaccctgacccagagagtggagaagatccgcagccccgac
ggttcccagaagagcccagtccgcatgtgccgtgacctgaagatgtcccaccctgagctg
aagagcgacttgtactggatcgaccccaaccagggatcctctctggatgccatcaaggtc
cactgcaacatggagactggcgagacttgcatctaccccagcgagtccagcattcccatg
aagaactggtacctcagcaagaacatcagagagaagaagcccgtctggttcagcgagtcc
atgaccggtggattccagttccagtatggcagcgatggagctgatcccgaggacgtcagc
atccagatggcctttgtgcgcctgatgtccaatcaggcctctcagaacatgacataccac
tgcaagaacagcattgcctacatggactccgccaccggcaatctgaagaaggccctgctt
ctccagggatccaacgacgttgagatcagagccgagggcaacagccgcttcacatacagt
gtcagcgaggatggctgcacgtcacacactggcacatggggcaagacagtcattgactac
aagacatcaaaaacatcccgcctgcccatcattgacattgctcctatggatgttggtgca
cctgatcaggaatttggcgtcgaagttggccctgtttgcttcttgtaa
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integrated database retrieval system
