Etheostoma cragini (Arkansas darter): 117937377
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Entry
117937377 CDS
T07493
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ecra03009
]
117937377 (pdcd11)
Ribosome biogenesis [BR:
ecra03009
]
Eukaryotic type
90S particles
Other 90S particles
117937377 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_PRP39_C
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
TPR_14
Suf
TPR_19
OB_RRP5_4th
HAT_Syf1_CNRKL1_C
OB_RRP5
UTP6_C
TPR_16
TPR_CcmH_CycH
ARM_TT21_5th
DUF2110
TPR_15
PilZN
PPR
ARM_TT21
NRDE-2
ANAPC3
Motif
Other DBs
NCBI-GeneID:
117937377
NCBI-ProteinID:
XP_034717186
LinkDB
All DBs
Position
2:23766391..23810560
Genome browser
AA seq
1838 aa
AA seq
DB search
MSFSSGLLPWRVAEKHTSETTSTMASVEEDFPRGGTAKKPTESKIVVQRTEVDNLFQSKE
KAETKKRKGAVKDDGKKLKKPKTGKGDGLMLNATAKCVEILHIKNVKEGILMLGCVKEVT
DFEVTVSLPCGMQGFLSIKNICDSYTKLLSEQLESADTEEICSLPHIFYPGMVFRCVVAK
VDVAKGGSLSIQLSINPKLINKALTATSLKAGMVLSGCVESVEDHGYIVDIGINGTKAFL
HKKAVKDKHSPEDLTVGQYVTAQVDEVKNDGRVVRLSVGPPGVAQACAESEQGWNLTNLL
PGLLVKATIKKVTKHGLILDFLSSFSGQVDFLHMEPGQTSSYTEGAEVQARVLYVEPSTR
LVGLSLRRYLLQPGTRVDLSPAEGDRIGEVVRNCKMTTMHHMSGAMLELPDKTLAFVHRN
HLKESSEPANENRVLAMTEHTCRILDFSAMDQIHFVSLRKSVIDKRFYRYQDLQAGQVVE
GKVSVLLTHGMLVHLSDHIKGLVPRTHLSDILLKNPEKKYIEGMKIKCRVLSVDAENKKL
YLTRKKALVESSLPLFLSYADARPGRVSHGYIVCIKDFGCIVRFYNNVKGLVPLRELSSE
PVISPEEVFFVGQVFKAKVLQCDPDKAKMVLSFKDAAEGDVEESAMAQFDCEVGKRLEAK
VLKKSVNGLEVVVLPDEVRAVLPTMHLSDHMSNCPVLWESLQEGDVVSNVMCFNKNKQNI
TLTKKPTVRWSLEEGVVAKDFSEITVGMQLVGWIKNIMSYGVFVEFPYGLVGLAPKSAMT
DKFISDTITVFEPGQTVLAKVTNLDEEKRRFLVTLKMSEVISPEGDVQTRLINGLQERKA
VAEMLAMRENSDLRPKLAALSIGQKLKLTVDTVKDCAATFKSDDLAGATILATKHHVMGV
NLTPGQKATAVILRVDILSTCVHVSLLPKLVAKKKSLAEGSKYTAMVQHIDKDFAVISLE
DTAQLTVIQTRGHLNETFLSESEKLKAGMSLAVEVIEPSCQELQGLSLVSWQRTAPNRQR
TASENQTSSKGYCFGEIVRGKVRTVKPTSLLVTLEDGSTGSVHVSEVVERADVCQGSFPT
ASVKVGSTVTARVIGGREASSHRYLPFSHPKFTYTIPELTLIPSKLDKSPDLKAVTVKEK
INSYKVGEEVTCFVSKFNPVRKILEVTTDPCVTGTVELLAMITDPKEASHPEKLYKLGQA
VHAKVVEVNSKPQRFMLSLTGVYKLEKDSEALGIVTNIQPQVGLLVKLPFGGMGTVDVTD
LADAYRPNPLDGYSKDKLFRFFLFGEEKGKWQLSLRPSRLNPHQAKPAKDPEVLSVDQLK
AGQIIRGYVKSVGEQGVFIRLSRSITGRAELQQSTKYFVNHHKVLSEHLTPNTLLTTKIL
SIDKEEELVHLSLLPEDTGKPDVLPESLGLPLRLIGEEKKEHDTKKKMKRALSESEQKQE
QSQVPKKKKKTKKAKTDDSDSGVEVYFREEEDKEVEEEPTPISVKQVTPSSAGPCRLQVA
AGFSWDVGLSSLKPASAAQEGDSSDGEDIDGSSKPQKKSRHELEQEKKAAEKALVQRETE
LMDPSLRPQDAAAFERLLLASPNSSLLWLQYMAHHLQATQIEQARAVAERAIKTISFREE
QEKLNVWVALLNLENMYGTDETLKKVFERALQFCEPMPVYQQLADIYAKSNKTKEAEGLY
KTMVKRFRQNKAVWLSYGTFLLQQGQSDTASALLQRALKSLPSKESVDVIAKFAQLEFRY
GDSEKGRTMFDKVLTSYPKRTDLWSVFIDLMVKHGSQKEVRALFDRVIHLSVSVKKIKFF
FKRYLEYEKKHGTPQSIQAVKEKAMEFVEAKGTEAASQ
NT seq
5517 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttcttccgggttactaccatggcgtgttgctgaaaaacatacgtctgaaaca
acatcaaccatggcatcagtggaggaggatttccctcgaggaggaacagcaaagaaaccc
acagagagtaaaatagtggttcagcggactgaagtggacaacttgttccagtcaaaggaa
aaagcagaaaccaagaaaaggaagggggcggtcaaagatgacggaaagaagctcaagaag
ccaaaaacgggtaaaggagatggtctgatgctaaatgcaacagccaagtgtgtggaaatt
ctacatatcaagaatgtgaaggagggtatcctgatgctgggctgtgtgaaggaggtaact
gactttgaggtgacagtcagcctgccctgtggcatgcaaggctttctcagcatcaagaac
atctgtgactcgtacaccaagctgctcagcgaacaactggagtcagctgatacagaggag
atctgctctctgccacacatattctatcctggcatggtgttcaggtgtgtggttgccaag
gtcgatgtagccaaaggaggctctcttagcatccagctgtcaatcaatccaaagctgatc
aacaaggctctcaccgcaacctctctgaaagctggcatggtcttgagtggatgtgtggag
agtgtggaggatcatggctacatagtggacattggcatcaatggaaccaaagccttcctg
cacaagaaagcagtgaaagataaacacagcccagaagatctgacagtgggtcagtatgtg
actgctcaggttgatgaagtaaagaacgatgggcgtgtggtccgcctttctgtcggcccc
ccgggcgtcgcccaggcttgtgctgaatccgagcagggctggaacctcactaacctgttg
cctgggcttctggtcaaagctacaatcaaaaaggtgaccaaacatggactgatcctggac
ttcctgtcctccttcagtggccaggtggattttctccacatggagccagggcagacatca
agctacactgagggagctgaggtgcaagcccgtgtgctgtatgtggagccgtccacccgt
ctggtgggcctgagcctgcgcaggtacctccttcagcccgggaccagagttgacctgtct
cctgctgaaggtgaccgcattggtgaggtggtgcgcaactgcaagatgaccactatgcac
cacatgtctggagccatgttggaactgccagacaaaactttggcctttgtacataggaac
cacctgaaggagtccagtgagccagccaatgaaaacagagtgctggccatgactgagcac
acctgcaggatcctggacttcagtgccatggaccaaattcattttgtttctctgcgaaag
agtgtgattgacaagcgtttttatagatatcaggatcttcaggccggacaggttgtggag
gggaaagtgtcagttctgctgactcacggcatgttggtgcacctgtccgaccacatcaaa
gggctggtgcccaggacgcacctgtctgatatcctccttaagaacccagagaagaagtac
atagagggcatgaagatcaaatgtcgggtgctgtcagtcgacgcggagaataagaagctg
tatctgaccagaaagaaggccctggttgaaagctctctgccattgttcctcagctatgct
gatgcccgcccaggccgcgtctcccacggctacatcgtctgcatcaaagacttcggctgc
atcgttcgtttctacaacaacgtcaagggtctggtgccgctcagggagctcagctctgag
cccgtcatcagtcctgaggaggtcttctttgtggggcaggtatttaaggctaaggttctt
cagtgtgaccccgacaaggcgaagatggtgctgtcatttaaggatgcggcggaaggagat
gttgaggaatctgccatggcccaatttgactgtgaggtggggaagaggctggaggccaag
gtgctgaaaaagtcagtcaacggtctggaggtggtcgtcctccctgatgaggtccgagcc
gtactacccacaatgcacctttccgatcacatgtccaactgccctgtgctgtgggagagc
ctgcaggaaggagacgtcgtctcaaacgtcatgtgcttcaacaagaacaaacagaatatt
accctcactaagaaaccaacagtgagatggtccctggaggaaggagtggttgccaaggac
ttctctgaaatcacagttggaatgcagctggttggctggatcaagaacatcatgtcttat
ggcgtttttgtggagttcccatacgggcttgttggtcttgcacccaagtcggccatgacc
gataagttcatcagcgatacgataaccgtcttcgagcccggccagacagtgctcgctaaa
gtgaccaacctagatgaggaaaaacggcgtttcctggtcacactgaagatgtcagaggtc
atatctccagagggagatgtccagaccagactcatcaatggtctgcaggagagaaaagct
gtggctgaaatgttagcaatgagagagaacagtgatcttcgcccgaagctggccgctctg
tccattggtcagaagctgaagctgactgtagatactgtgaaggactgcgctgccaccttt
aagtctgacgatttggccggtgctaccatactagccaccaagcaccatgtcatgggtgtt
aatttgaccccaggacagaaagctactgcggtcatcctccgtgttgacatcctgtcgaca
tgtgtccatgtgtccctccttcccaagctggtggcgaagaagaaatcgttagctgaagga
tcaaagtacacggcgatggtgcagcacatcgacaaagactttgccgtcatctcgctggaa
gacacagcacagctgactgtgatccaaaccagaggccacctgaatgagacatttctgtcc
gagtcagagaagctgaaggcggggatgagtttggccgtcgaggttatagaacccagctgt
caggaactgcaggggctctccctagtgtcgtggcagcgcaccgccccaaaccgacagcgc
accgcctcggaaaatcagacgagctctaagggttactgcttcggcgaaatcgtgcggggt
aaagtacggaccgtgaagcccacctcccttctggtcacactagaggatggaagcactggc
agcgtgcacgtgtctgaggtggtggagcgtgcagatgtgtgtcagggatctttccccact
gcctctgttaaagtgggcagcacggtcaccgccagggtcatcgggggccgagaagcctcc
agtcacagatacttgcccttctcccatcccaaatttacatacaccattcctgagctcaca
ctcatacccagcaaacttgataagagtccagatctcaaagcagttacagtaaaagaaaaa
ataaacagctataaggtcggggaagaagtgacatgctttgtctcaaagtttaatccagtg
aggaagattttggaggtcaccactgatccctgtgttactgggacagttgaactgctggcc
atgatcaccgatccaaaagaggccagccacccagaaaaactgtacaagctgggccaagca
gtccatgccaaagtggtagaagtaaactccaaacctcaacgctttatgctgtcactcaca
ggtgtctataaactggagaaagacagtgaagctttggggattgtgactaatattcaacca
caagttggcctcctggtcaaacttccctttggtggcatgggaactgttgatgtcactgac
ctggctgacgcctacagaccaaaccccctggacgggtacagcaaggataagctgttcagg
tttttcctttttggggaagaaaaaggcaagtggcagttgtctctacgtccatcaaggctg
aacccacatcaggccaagccagcaaaggacccagaagttttgtctgtagaccaactgaag
gcaggccagatcatcagaggctacgtcaagtccgtgggagagcagggggtcttcatcagg
ttgtcaagaagcatcacaggaagagctgaacttcagcagtccaccaagtactttgtaaac
caccacaaagtcctctctgagcacctgactcccaacaccctgctcactaccaagatcctc
agtattgacaaagaggaggagttggtccacctctcgctgctcccagaggacaccgggaag
ccagacgtccttccagagtctctcggtctgccgctgcgtctgattggagaggaaaagaag
gaacatgacactaagaagaagatgaaacgtgctttgtctgagagcgagcagaaacaagaa
cagtcccaggtccccaagaagaagaagaaaaccaagaaagcaaagactgatgacagtgac
agcggagtggaggtgtacttcagagaagaggaagacaaggaagttgaagaagaacccaca
cctatttctgtaaagcaggtgacgcccagctcagcgggtccatgcaggctgcaggtggca
gcaggtttctcctgggatgtgggactgagctccctgaagcctgcctctgcagcacaggag
ggggactccagtgatggggaggacatagatggaagcagcaagccccagaaaaagtctcgt
catgaacttgagcaagagaaaaaggccgccgagaaggccctggtacagcgggagactgag
ctgatggatccgagcctgcgaccccaggacgcagccgcctttgagcgcctgctcctcgct
tcacccaacagctcactgctttggctccagtacatggctcaccacctacaggccacccag
atcgagcaggcccgcgctgtggccgagagggccatcaagaccatctcctttagggaagag
caagagaagctgaatgtgtgggtggccctgctgaacctggagaacatgtacggcacagat
gagaccctgaagaaagtgtttgagcgggcgctgcagttctgtgagcccatgcccgtgtac
cagcagctggctgacatctacgcaaagtccaacaaaaccaaggaggcggagggcctgtat
aagacgatggtaaagcgtttccgtcagaacaaggcagtgtggctcagctacgggaccttc
ctgctccagcagggtcagagtgacactgccagtgctctcctgcagagggcgctcaagagt
ctgccctccaaagaaagtgtggatgtgatcgccaagtttgctcagctggagttccgttat
ggtgattcagagaaaggtcgcaccatgtttgacaaagtcctgacgagctacccaaaacgc
acggacctctggtccgtctttatcgaccttatggtcaaacatggatcacagaaggaagtt
agggcgctctttgatcgcgtgatccacctgagtgtttcagtaaaaaagatcaagttcttc
ttcaagcgctacttggagtacgagaagaagcacggcactccgcagagcatccaggcagtc
aaggagaaggccatggaatttgtggaagctaaaggcacagaggctgccagccaatga
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