Etheostoma cragini (Arkansas darter): 117938018
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Entry
117938018 CDS
T07493
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117938018 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecra03032
]
117938018 (topbp1)
03400 DNA repair and recombination proteins [BR:
ecra03400
]
117938018 (topbp1)
DNA replication proteins [BR:
ecra03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
117938018 (topbp1)
DNA repair and recombination proteins [BR:
ecra03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
117938018 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
117938018
NCBI-ProteinID:
XP_034718225
LinkDB
All DBs
Position
22:complement(17032877..17047707)
Genome browser
AA seq
1516 aa
AA seq
DB search
MSKGDRAGFIVKFVECNAKGQKKEYAVKAYEAILELQSDKYLKTVDEDTVLQMDQKDKSL
FVFSSFTTPAFLHCKKLGCRVVSPLVVLYCLQQQHCVPKAETPVYNMAMADITISCTSLD
KATRTEVMDLVQLMGGRVYLDLNVSVTHLIAGEVGSKKYLVAASLSKPILLPTWVKACWE
KSQDSLFRYTDLPIEDYLCPVLRGCTVCVTGLSSTERKEVQRLCDQHGANYTGQLKMNEC
THLIVSEPTGQKYECAKKWNVYCVSLHWLFDSIEKGFCQDETRYTVERNASKTTRPHTST
PTGTNRKEEGPSLLGLSHISVNASMTVNDTALTNATISRLEAPDPIDTLDLTICPADDIL
DGCKLYLCGLPGKKLEKLRRLVNSAGGLRFNQPSEELTHVVMGELDQVLKSFLCKAVHRP
HVVTVQWLLDSFSKGSQLPEAGYLHPDCLPPTLAAVFVPARHTPTSRHSDGPPTASPSTP
RQTRAEEDLLSQYMDDDPTVVDMAQPAKGKSRKSISTSSEPCAPNYSRGPEPDSTLQEAS
EAGLFLGKCFLFVGFGNEAEAQLSLLVTENGGRVLMGRTRVVADYAVVPLLGCSVEATVD
EVVTDTWLAMCVEKESVLQLSSNPLFTPVSVMDGRFPLKDCVLSVSQFTGAERESLVELA
KHLGANVQDYFVRLANQKKMMLASTHLVLQSPEGTKYQAAKKWGFPAVTMHWILESARTG
QRAEEGRFLVDLPPSPERDDESFVGGSQKPAMPPPARMSPEIPLLGLQSGKAVTPLDLGR
FQSKVFHSVFDEMKPKKDISTPKQNQEGSRRNPLQKEASLQLDTPSRFLSRDQLFRPSFN
VKDVLGDLETPGGRTKPGERMETPLTEVVNRTLQVALANSSRSTASDMQAISASPQFTKT
TEKEVSEREAGPLTGVVICVGKKLSKMQGELNAIAASLGADFRWACDDTVTHYIYQGRVG
DNTREYRGVKERGLHVVSQYWLQACADEQRHVPESLYPFTYNPKMSLNLSQVPNNSQKSP
PFTRTQLKDIYEANDDKCDHVATEEATSRRVSDGSGDQEVMNETTDRTDISETLEMRENL
QRQLQEIMSATKLTTGRRASVRLSRMGSGGADSGPHTPDGSRFGRCGSRRTLEALRVTRE
AAMDINTEPSQSEQIVWDDPTARQERAKLADNLQWPGSPSQQSETVAPPPPPTAENGSEF
RDSMTDSELVEMAACDVIDRHMGQKVTTAPTVERGNDILTPNAPSIAFPITNPPVVPEPH
EEREEEKQPPRFQLSSLSPQERIDYSHLIEELGGVVLDRQSFDPSCSHIIIGTPLRNEKY
LAAMAAGKWILHRSYLEACRSVGRFIQEDEYEWGSSSILDALPSITSQQRRLALAAMRWR
KTLHGCSEQGGAFSGWTVMLNIDQSRESGFRRLLQSGNAKVLPSPSPSLYKETTHLFADF
VRLKPGDFKVNVSEATSLGVTCLKPEYIADYLMQEPTPPIELYYLTEVSSEEPPDTPSRK
RKASADNSRLKKTRLN
NT seq
4551 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaggagacagagccggcttcattgtgaagtttgtggaatgtaacgctaaagga
caaaaaaaagagtatgctgtcaaggcttatgaggccattttggagctgcagtctgacaag
tacttaaagaccgttgatgaagatacagttttacagatggaccagaaggacaagtctctg
tttgtcttcagcagcttcactaccccagcctttctgcactgcaaaaagcttggctgccga
gtggtgagtccactggtagtgttgtactgcctgcagcagcagcattgtgttccaaaagca
gagacacccgtctataacatggccatggctgacatcactatttcctgcaccagtctggat
aaagccacccggacagaggtgatggatctggtgcaacttatgggtggacgggtctacctt
gacttaaatgtatctgtcacacacctaatagcaggagaagtgggcagcaagaaatacctg
gtagctgccagcctgagtaaacccatcctgctgcctacatgggtcaaagcatgttgggag
aaatctcaggacagtcttttcagatatactgatctacccattgaggactatttgtgccct
gtgctgcgtggctgcactgtttgtgtgacaggcctctccagcacagaacgtaaagaggtg
cagcgactctgtgatcagcatggagccaattacactggtcagctcaaaatgaatgagtgt
acacacctcattgttagtgagccaacaggtcagaagtacgagtgtgcaaagaagtggaat
gtgtattgcgtgtctctgcactggctgtttgacagcatagaaaagggcttttgtcaagac
gagaccaggtacactgtggagcggaacgcatcaaagaccactcgaccgcacacttccact
cccactggcaccaacaggaaggaggagggaccatctctgttgggcttaagccacatttct
gtcaatgctagcatgacagttaatgacacagccctcaccaatgccaccatcagccgcttg
gaagccccagaccccatagatactctggatctcaccatctgcccagctgatgatatactg
gatggttgtaagctgtatctgtgtggcctgccagggaagaaactggagaagctgcggcgt
cttgtgaactctgcaggaggtctgcgctttaaccagcccagtgaggaactcacacatgtg
gtcatgggagagctggaccaggtcctcaagagttttctgtgcaaagcagtacatagaccc
catgtagtaacagtgcagtggctgctggacagtttcagcaaaggcagtcaactcccagaa
gcaggttacctccaccccgactgtctgcccccgactctggctgctgtatttgtgcctgct
cgtcacactcccacctctcggcattcagacggtccccccacagccagtcccagcactcct
aggcaaacaagagcagaggaagatctgctctcgcagtacatggatgatgaccctacagta
gtggacatggcccaaccagcaaagggaaaaagcaggaagtccatcagtacatcttctgag
ccttgtgcaccaaactactccagaggaccagagccagactcaaccctgcaggaagccagc
gaggcaggcctatttttggggaaatgtttcctttttgtgggctttggcaatgaggcagaa
gcccagctctctctgctggtgacagaaaatggaggcagggtgctgatgggccgtacacgt
gttgtggcagactatgcagtggtcccgctattgggctgttcagtggaggccacagttgac
gaggtggtcactgatacctggctggccatgtgtgtggaaaaggagtctgttttgcagctg
tcctccaaccctttgttcacacctgtttctgtgatggacgggcgttttcctctcaaagat
tgcgttctctctgtcagccagttcaccggagcagagagggagtctttggtggagctggcc
aagcaccttggagccaatgtccaagattactttgtgcgcctggcaaaccagaagaaaatg
atgctggccagcactcatctggtgctgcagagtcctgaaggcacaaaataccaggcagca
aagaaatgggggtttccagccgtcaccatgcactggatactagagtctgctcggaccggc
cagagggcagaggaggggcgttttctagttgacctgccgccctccccagagagggatgat
gagagttttgttggtggttcccagaagcctgccatgcctccaccagcacgtatgtctcca
gagatccctttgctgggtctccagagcggaaaggccgttacaccgctggatttgggtcgc
ttccagagcaaagtgtttcactccgtgtttgatgaaatgaaacccaaaaaagacatcagc
acccccaaacaaaaccaggagggcagcagaaggaatcccctacagaaggaagcctccctg
cagctggacactccctctcgtttcctcagcagagaccagctgttcaggccctccttcaat
gtcaaggatgtactaggagatttggagaccccaggtgggagaactaaaccaggagagagg
atggagactccactgactgaagtcgtcaacaggactctgcaggtggctcttgccaacagc
tcccgaagtaccgcctcagatatgcaagccatctctgctagcccccaatttaccaagacg
actgagaaggaggtctcagaaagagaagctggccctctgactggtgttgtgatctgtgtg
ggaaagaaactgagcaagatgcagggtgaactcaatgccattgctgcctcgcttggagca
gacttcaggtgggcttgtgacgatactgttacacactacatttaccagggccgtgtgggg
gacaacacccgggaatacagaggagtgaaggagagaggactgcatgttgtctcccagtac
tggctgcaggcttgtgctgatgagcagaggcatgtcccagagtctctgtatcctttcacc
tataaccccaagatgagcctaaacctcagccaggtgcccaacaactctcagaagtctcct
ccttttacacgaactcaactcaaagacatatatgaggcaaatgacgacaagtgtgatcac
gttgccacggaagaagccacatcacgtcgtgtaagcgatggaagcggagatcaagaagtg
atgaatgaaactacagatagaactgacatttcagagactctagaaatgagagagaacctg
caaagacagctacaggagatcatgtcagccaccaagctgacgacagggaggcgtgcctca
gtcagacttagcaggatgggatcaggaggggccgactcgggcccccacacacctgatggg
agtcggtttggacgctgcgggagcagacgtactctggaagctctgagggttaccagagaa
gcagctatggacataaacacagagccatctcagagtgaacagatagtttgggatgaccct
acagccagacaggagagggccaagctggcggataatttacagtggcctggtagtccctca
caacagtctgagaccgtcgcacctcctcctccccccactgcagaaaacggctctgagttc
agggactccatgacagactctgagctggtggagatggctgcttgtgacgtcatcgaccgg
cacatgggccagaaagtcacaacggctccaacagtggagcgaggaaatgacatcctcact
cctaacgcccccagcatcgccttccctatcaccaaccccccagtagtaccggagccacat
gaggagcgtgaggaagaaaagcaaccacccagatttcagctgtcctccctcagccctcag
gaacgcattgattacagtcacctaatagaggagcttggaggtgtagtcctggacaggcag
tctttcgaccccagctgctcgcacatcatcataggaactccactgcggaacgagaagtat
ctggcagcaatggcagcgggcaagtggatcctgcaccgctcatacctggaggcctgccgc
tctgtgggtcgcttcatccaggaggatgaatatgagtggggcagtagctccattttggat
gcgttgccctccatcacctcccagcagaggagactggcgttagctgccatgcgctggaga
aaaaccctgcacggatgctctgagcaagggggagccttcagtggatggacggtaatgctg
aacattgaccagagcagagaatcaggcttcaggcggttactgcagtctggcaatgcaaag
gtcctgccgagtccctccccgtccttgtacaaggagaccactcacctgtttgcagacttt
gttcggctgaagcctggagacttcaaggtcaatgtgtcagaggctacctccctcggagtc
acgtgcttgaagccagagtacatcgcagactacctcatgcaggagccaaccccgccgatc
gagctgtactacctgactgaagtttcctctgaagaacctccagacactccgtcacgtaag
cgcaaagcctcagcggacaactcccggctgaaaaaaacacgccttaactaa
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