Etheostoma cragini (Arkansas darter): 117938137
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Entry
117938137 CDS
T07493
Symbol
trpa1b
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1b
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ecra04040
]
117938137 (trpa1b)
Ion channels [BR:
ecra04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
117938137 (trpa1b)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Ion_trans
Ank_KRIT1
ANK_LRRK2
DUF465
Motif
Other DBs
NCBI-GeneID:
117938137
NCBI-ProteinID:
XP_034718462
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All DBs
Position
22:12440419..12457371
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AA seq
1118 aa
AA seq
DB search
MNFSRDVTRQTSCYTYVIEDEDPALSRLNVFKLAEKGELALLENLVKKSPEVLSEKDECG
ASPLHHAAAGDHINLIQFITTVIDSQDLNSCDDQGNVPLHWAVERNKAESCRALLDLGAN
PNILNMVLMSPLHLAVSHGYNDLVELLLSYSATDCNLQGDLGNTPVMLACSINNCEALST
LLKHGARLCQQNKLGHFPIHAAAFSGAKKAMEVIMMAGEKLGHQADFHINYLDKSKSSPL
HLAVRGGNIEAISLCIATGAKVDQQQNDRSTPLHLACTQGATEVVKLMLSSFDQVEDIIN
LTDGACQTPLHRATIFDHTDLAEYLISLGADLNSIDCKGNSPLLLAASCGAWKTVTLLLS
KGANVNVRDRRGCNFLHLTILQPKGLKNLPEDLLQSGAVKALLSCEDNEGCTPLHYACRL
GIHDSVKNMLGLSGQVGLSCKSKDKKSALHFAAQYGRLNTCKRLLETITDSRLLNEGDER
GLTPLHLASKEGHTKVVQLLLRKGALFHCDYKGWTCLHHAASAGYTQTMDILLSANLKLL
DKTDEDGNSALHIAAREGHVAVVRLLLAQGAALTLNKNDTSFLHEALQNGRKDVVNNVID
SHRSAEALSLYTPGSGQRSPILDMIEFLPETYKHLLDRCVRESDDDHNCPDYHIEYNFSW
LQAPLESRKVTDKTLRVQPLAALNAMVKYNRIELLNHPVCKKYLAMKWFAYGSTAHVLNM
FMYLMGLLPLTHLIVTLRPTLNTTDTGEHIIMMVPTSFIQQSLFLSFCMVMVLVMNFYCI
VKELVQISQQRWNYFKDYSNQSDWFSAVLSLLFIIPTMLNVEGSLQWQAGALAVLSSWIG
FLLYLQRFEGVGIYVVMFWEIMRTLVRIVMLFVYLMLAFSLAFHALMLNQKEFETVPLSV
IQTFVMMVGELNYQNNFLDTYLKNELPFGILTYIIFVNFVLLMPILLVNLMIGLAVGDIA
EVQRNAALKRIGMQIELHTALEDKLPYWFMKRVDKPSLTIYPNRYCSRNYIKQLFTGEEE
TNDAWNRLQVKSQSCTVLENELKKQKLRLKEVSSMMEKQHNLLKLIIQKMEISSEADEYD
GPVNIRGNMWPSLTQVKPKGISVSRWVPLLKAIESKKK
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcagcagggacgtgacgcgacagaccagttgttatacatatgtgatagaggat
gaggatccagccctgtcaaggctaaatgtatttaagttggctgagaagggtgagctggct
ctcctggagaacctggtgaagaagagcccagaggtcctgagtgagaaagatgaatgtgga
gctagtccccttcatcacgccgccgcaggggaccacatcaacctcatccaattcatcacc
actgtcatagactcacaggatctgaacagctgtgatgaccagggcaatgtgcccctacac
tgggcagtggagaggaacaaggcagagagctgcagggctcttctagacctgggggccaac
cccaacatcctcaacatggtcctcatgtcccctctgcacctggctgtcagccacggatac
aacgacctggtggagctgctgctgtcatacagtgctacagactgcaatctacagggagac
cttgggaacacccctgtgatgcttgcctgctccatcaataactgtgaggctctcagcaca
ttgttaaagcatggagcacggctctgccaacagaacaagctcggccatttccccatacat
gcagccgccttctcaggggcaaagaaagccatggaagtaatcatgatggccggagagaag
ttaggccaccaagctgatttccacatcaactatttggacaagtccaagagcagtcctctc
catctcgctgtacgtggcgggaatattgaagccatcagcctttgtattgctactggagcc
aaagttgaccagcaacagaatgacaggtccacaccgcttcatttggcctgcacccagggt
gccactgaggtagtcaaactgatgctgtcatcctttgaccaagtggaagacatcatcaac
ctaactgatggggcgtgtcagacccctctacacagggctacgatatttgaccacacagac
ttggcagagtacctaatttcattgggtgcagacctcaacagcattgattgtaaaggaaac
tctcccttgctgctggctgcaagttgtggagcatggaaaactgtcactctgctgctgtca
aaaggggctaatgtaaacgtgagagacagaaggggttgtaacttccttcacctgaccatt
cttcagcccaagggtctgaaaaacctcccagaagacctactgcagagtggtgcagtgaag
gcactgctgagctgtgaggataatgagggctgcaccccactccactacgcttgcagactg
ggtatccatgactcagtgaagaacatgctgggcctctcggggcaggtcggcctctcatgc
aagtcgaaggacaagaagtctgccttgcactttgctgctcagtatgggcgcttaaataca
tgtaagcgattactggagaccattacagactctcgtctgctaaatgaaggtgacgagcga
ggcctgacaccgctgcatttggcttcaaaagaggggcacaccaaggtggtacagctgttg
ctgcgcaaaggagctctctttcactgtgattacaagggttggacgtgtctacaccatgct
gcatctgcaggatacacacaaactatggacattctcctgtcagccaatctcaagttgctg
gataaaacagatgaggatgggaactctgcactccacatcgcagcaagagaaggacatgtg
gctgtggtcaggctcctgctggctcagggtgcagcgctcaccttaaacaagaacgacacg
tcattcctccatgaagctctgcaaaatgggagaaaagatgttgtcaataatgtaattgac
agtcacagatctgctgaggctttgagcctgtatacacccggttctggccagcgaagtccc
atactagacatgattgagtttctgcccgagacctacaagcacctgttggaccgctgtgtg
agggaatctgatgatgatcacaactgtcctgactatcatattgaatacaatttctcgtgg
ctccaagctccccttgaatcgaggaaggtaactgacaagaccttgagggttcagccacta
gctgcactcaatgcaatggtgaagtacaaccgcattgaactactcaaccaccctgtctgc
aaaaagtacctagcaatgaagtggtttgcatatgggagcacagctcatgtgctcaacatg
tttatgtacctgatgggtctgctgcccctcactcacctgatagtgactctgaggcccact
ctgaacaccactgacacgggcgagcacattattatgatggtgcccacatctttcatacag
caaagtctgttcttgtccttctgtatggtgatggtcttggtcatgaacttctactgcata
gtgaaggaattggtgcagatatcacaacagcgctggaattacttcaaggactattccaac
cagagtgactggttttcagcagtcctctctcttctgttcatcattcccaccatgctcaat
gtagagggttctttacaatggcaagcaggggcgttggcagttttaagctcctggattgga
tttctcctttatctccaaaggtttgaaggcgtaggcatctacgttgtgatgttttgggag
atcatgaggacactggtccgtattgtgatgctgttcgtgtacctgatgttagcattcagt
ttggcatttcatgctctaatgctcaaccagaaagaatttgaaaccgtgccgctctcagtg
atacaaacctttgtgatgatggtcggggaactcaactaccaaaacaacttcctggacact
tatctgaagaatgagcttccttttggtatcctgacgtacatcatttttgtgaactttgtt
ctgctcatgccaatactgctggtgaacctgatgatcggtttagcagttggagatattgcc
gaagtacaaagaaatgctgccctaaaaagaataggcatgcagattgagctccacaccgct
ctggaagacaagctgccttattggtttatgaaacgagtggacaaaccctccctcaccatt
tatcccaatcgatactgctccaggaactatataaagcaattattcacaggtgaagaggag
accaatgatgcctggaatcgtctgcaggtcaaatcacagagctgcactgtgttagagaac
gagctcaaaaagcagaagctcaggctgaaagaggtgtcaagcatgatggagaagcaacac
aacctcctgaagctcatcatccagaagatggagatctcctcagaggcggacgagtacgac
ggccctgtgaacatccgaggcaacatgtggccgagtttaactcaggttaaaccaaaagga
attagcgtgtcgcgttgggtcccactgctgaaggccatcgagtcaaaaaaaaagtga
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