Etheostoma cragini (Arkansas darter): 117938212
Help
Entry
117938212 CDS
T07493
Symbol
pan3
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117938212 (pan3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117938212 (pan3)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117938212 (pan3)
mRNA degradation factors
3'-5' decay
Pan complex
117938212 (pan3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf-CCCH_4
zf_CCCH_4
Torus
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
117938212
NCBI-ProteinID:
XP_034718608
LinkDB
All DBs
Position
22:complement(13429600..13449758)
Genome browser
AA seq
807 aa
AA seq
DB search
MHLSLIISGGGSSGAMNSGLPASAAPLGGVGIPNVKVKFCRYYAKDKTCFYGDECQFLHD
DPSMGSLPLHGGGSPVPLSMAGGGGTPAVYSLGSSAAACPGGGGTGVSKKSEILGPASTS
LEGQLLTIPGMEGATLSDANLTNSYFSSSFIGVNGFGSPAESKYSMMQRMTTSSSSPSLL
NDGAKNFSHSTHDPVNSPTSSLFSDFGALSISQRRKTPNPAASEFIPKGAPRMATMAQST
VQAFPSPIFPHPGLSSSTAAALAPGMSLSAGSSPLHSPKITPHTSPAPRRRSHTPNPANY
MVPTTAADQGTHIIQKETVGGTTYFYTDNTPAPMAGMVFPTYHIYPPTAPHVAYMQPKAN
APSFFMADELRQELINRHLITMAQIDHSENPDVPSEVDSYHSLFPLEPLPPPNRMQKTSN
FSYITSCYKAVNSKDDLPYCLRRIHGFRLVNTKCMMLVDMWKKIQHSNSVMLREVFTTKA
FGDHSLVFSYDFHAGAETMFSRHFNDPAADSYFTKRKWGQHEPPPPRQHAGLLPESLIWA
YIVQLSSALRTIHTAGLACRVMDPSKILITGKTRLRVNCVGVFDVLTFDNSQTNHLALMP
QYQQADLVSLGKVVLALACNSLAGIQRENLQKAMELVSINYSSDLKNLILYLLTEQSRLR
SVNDIMPMIGARFYTQLDASQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDP
TWSETGDRYLLKLFRDHLFHQVTEAGTPWIDLSHIVSCLNKLDAGVPEKISLVSRDEKSV
LVVTYSDLKRCFDSTFQELQAAASGSL
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgcatcttagtcttataatcagcggtggcggcagcagcggtgccatgaacagtggactc
ccagcctcagctgctccgctcgggggtgtcgggatacccaatgtgaaggtgaagttttgc
cgatattacgcgaaagacaaaacctgcttttatggagacgagtgtcagttcctgcatgac
gatccgtccatgggaagcctgccgctgcacggaggcggtagccccgtcccgttgtccatg
gctgggggtggcgggacgccagctgtgtattcccttggcagctccgcggcggcctgtccg
ggtggcggggggactggtgtgtccaagaaaagcgaaatattgggccctgcaagcacgtct
ctggaggggcagctattaaccatcccagggatggagggtgcaaccctgagcgatgccaat
ctcacaaactcgtacttcagcagcagctttattggggtcaatgggtttggaagcccagca
gagtctaaatactcaatgatgcagcgaatgactaccagcagcagctctcccagtctcctc
aacgatggtgccaaaaactttagccacagcactcatgatccagtgaactccccgacatct
tcactgttcagtgattttggtgcccttagcatttcccaaaggagaaagactccaaaccct
gcagcaagtgaattcatccctaaaggagctccacgaatggccaccatggctcagtccact
gtccaggcattcccctcgcctatcttcccacatcctggccttagtagctcaacagctgct
gcacttgctcctggcatgtctctgtctgccggatcttctcctctccactccccaaaaatc
acaccgcacacctcacctgctcctcgtcggcgcagtcacaccccaaaccctgcaaactac
atggtgcccaccactgcagctgaccagggcactcacataatccagaaagagactgtaggg
gggaccacctacttctacacagacaacaccccagcaccaatggctgggatggtgtttcct
acctaccatatctatcctcccactgcgccccatgtggcttacatgcagccaaaagccaat
gccccgtccttcttcatggctgatgaacttcgacaggagttaataaacagacatctgata
accatggcccagattgaccattcagagaacccagatgtaccatctgaggtggacagctac
cacagcctcttccccctcgagcccctccctccaccaaaccgcatgcagaagaccagcaac
ttcagctacattacctcctgctacaaggcggtcaacagcaaggatgacctgccttactgc
ctgaggaggatacacggtttccgccttgttaacaccaagtgcatgatgctggtagacatg
tggaagaagattcagcactcaaactctgttatgctgagggaggtcttcaccacaaaggca
tttggagaccactcgttggtgttctcctatgactttcatgcgggtgcagaaaccatgttc
agcagacattttaatgacccagcagcagactcgtactttaccaagaggaagtggggacaa
catgaacccccaccgccacggcagcatgcaggtctgctccccgagtctctgatatgggcc
tacattgtccagctcagctcggccctgcgcaccatccacactgccggactggcctgccgt
gtcatggaccccagcaagattcttattactggcaagaccaggttacgggtgaactgtgtt
ggggtgtttgatgtcttaacttttgacaacagtcagaccaatcatcttgccctaatgcca
cagtaccagcaagcagacctcgtgtcactgggcaaggtggtgctggcgttggcatgtaac
tccctggctggtattcaaagggagaacctgcagaaggccatggagctggtgtctatcaac
tactcttcagacctcaagaacctcattctgtatctgctgactgaacagtctcgtcttcgc
agcgtcaatgacattatgccaatgattggagcgcgattctacacacaactggatgcatcg
cagatgagaaatgatgtcattgaggaagatctggccaaggaggtgcaaaatggccgtctc
ttccgcctgttggccaaactgggcacaatcaacgagcggccagagtttcagaaggatcca
acgtggtcggagacaggggaccgctacctgttgaagcttttccgggatcacctgtttcac
caggtgacagaagctgggacgccatggattgaccttagtcacatcgtctcctgtctcaac
aaactggatgcgggcgttcctgagaagatcagcctggtgtctcgggatgagaaaagcgtc
ctggttgtgacctactcggacctgaagcgctgcttcgacagtaccttccaggagctgcag
gctgcagcctccggctctctgtag
DBGET
integrated database retrieval system
