Etheostoma cragini (Arkansas darter): 117938323
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Entry
117938323 CDS
T07493
Symbol
lsm5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03018
RNA degradation
ecra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117938323 (lsm5)
09123 Folding, sorting and degradation
03018 RNA degradation
117938323 (lsm5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117938323 (lsm5)
03041 Spliceosome [BR:
ecra03041
]
117938323 (lsm5)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117938323 (lsm5)
mRNA degradation factors
5'-3' decay
Lsm complex
117938323 (lsm5)
Spliceosome [BR:
ecra03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
117938323 (lsm5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
LSM12_LSM
Motif
Other DBs
NCBI-GeneID:
117938323
NCBI-ProteinID:
XP_034718757
LinkDB
All DBs
Position
22:21100171..21103291
Genome browser
AA seq
93 aa
AA seq
DB search
MNMAATPVTNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFE
ITPEGRRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgaacatggcggctactcccgtaacaaacccgtcacagctgctccctctggagcttgtg
gacaaatgcatcggctcccgaattcacatcgtcatgaaaacagacaaagaaatcgtcggc
accctgctgggttttgacgactttgtcaacatggtcctggaagacgtgacagaatttgaa
atcacaccagagggacggaggataaccaaactggaccagatccttctcaacggcaacaac
atcaccatgctcattcctggaggagaaggtcctgaagtgtga
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