Etheostoma cragini (Arkansas darter): 117938378
Help
Entry
117938378 CDS
T07493
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecra04121
]
117938378 (pdzrn4)
Enzymes [BR:
ecra01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117938378 (pdzrn4)
Ubiquitin system [BR:
ecra04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
117938378 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
GRASP55_65
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
117938378
NCBI-ProteinID:
XP_034718819
LinkDB
All DBs
Position
23:complement(10473552..10509168)
Genome browser
AA seq
820 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYEIAQVNGRNFSKVDHEEAVVEAIRRDPIVVQVLRRTPTRST
AAVAHNYSGAPHDVSVVDVCTQTDITFEHIMALAKLRPATPPVPDICPFLLSDSCHSIHT
MEHEFYECPEYLSNIPAEVERTEEYEYEEVELCRQNNQEKLGLTLCYRTDDEEDTSIYVS
QVEPNSIAARDGRIKEGDRILQINGCEVQDREKAVALLSSEEARSIILLVTRPEIQLEEE
VWLDDEQQELVEELKMEILEERRRQKEHKFDRGDEHLAEEEIATDTATCSSNNQDKDSGF
RRSTDSPEHQPLLARLYRRTPAHCLRERWRAENPHTRRGTVLPQNTQSPKTFSNGKGHEG
VVSIRNSGGGILGLENRFQQLLELKCQIRNGGECGVYSIRHSIECSLTEHGVDEDGIDGV
GGENGVEQDLRMLNEELRSIELECQSIMQAHQLRQANQLDPSQPASCSPGRTPKDGHKRH
GRLADIHEYPERSDIDRIREKDSSSAYNTAESARSTPLGMERSPDHSLQRHISITNQKNL
RLASSTPSSPIPIPKPRGTPSHSRSADPGSVISSSPDQSNPSRSESDPALPADDERCEKK
GRTRDSKRGLPYGSYQTTPYQGQGGSRQLQSYMQLLQKHSSLEYSQSQLSLLSVCRDPVH
RSGRPGEPRLEWKVKVRADGTRYVARRPARDRILRERALRIREERSGGMTTDDDTMSEMK
MGRYWSKEERKQHLARAREQRKRREFMQKSRLECLKEGPASGAEGRKEINILELSHKKMM
KKRNKKILDNWMTIQELMSHGARVPEGSKVHNAFLSVTTV
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatttgtgcaccttgcagaaacgggaggaacactacaaactgctgtatgag
attgcacaggtgaacgggcgcaacttctccaaggttgaccatgaggaggcagtggtggag
gccatcaggcgagaccccattgttgtccaagttctccggcgaaccccgaccagatccaca
gccgctgttgcacataactacagcggcgcaccacatgacgtgtctgtggtggatgtttgc
acgcaaactgacattaccttcgagcacatcatggcactggcaaagcttcggcccgctact
ccgcccgtccccgacatctgtccctttcttttgtccgacagttgtcattccatccacacc
atggagcatgagttttatgaatgtccagagtacctgtctaatatcccagcagaagtggag
aggactgaagaatatgagtatgaggaggtggagctgtgcaggcagaacaaccaggagaag
cttggcttgacgctttgctacaggaccgacgatgaggaggacaccagcatctatgtcagc
caggtggagccaaacagcatagcagcaagagatggacgcatcaaggaaggagatcgaatt
ctacagataaatggctgtgaagtgcaagacagagagaaagccgttgccttgttgtcaagt
gaagaagcaaggagcatcatactactggtgacaagaccagaaatccagctggaagaggag
gtatggctggatgatgagcaacaggagctcgtggaggagctgaagatggagatcctggag
gagaggaggaggcagaaggaacataaatttgacaggggagatgagcatctagctgaagaa
gagatagcaacagatacagccacctgttcgtccaacaatcaagacaaagacagtgggttt
cgacgcagtacagacagtccagagcaccaaccactgctggctagactctacaggaggacc
ccagcccactgcctgagggaacgatggcgggcagagaatccacacacaagacgggggact
gtacttccacagaacacccagagtccaaagacattttccaatggcaaaggccatgaaggg
gtagtcagtattcgcaatagtggaggcgggatcctaggtttagagaatcgcttccagcaa
ctacttgagctcaagtgtcaaatccgaaatggaggagagtgtggggtgtactcaattcga
cacagtatagagtgtagtctcactgagcatggagtggatgaagatggcatagatggtgtt
ggaggagaaaatggagtggagcaggacttaaggatgctaaatgaggaactgcgcagcatt
gagctagagtgccagagcatcatgcaggcacatcagctccgccaggccaaccagctggac
ccctcacaacccgcgtcctgctcgccaggacggacccctaaagatggacacaagcgacat
ggcaggttggccgacatccacgagtacccggagcggtcagacattgacaggatccgagag
aaggacagctccagtgcctataacacggcagaaagtgcaaggtcgacaccactaggtatg
gaaagatcacctgatcattctctgcagagacacatcagcatcaccaaccagaaaaacctc
agactggcttcctccacaccatccagccccatccctatccccaagccccggggtacacct
agtcatagcagatcagcagacccaggctccgttatctccagcagcccagaccagagcaac
ccttcccggtccgaatcagaccctgccctgcctgcagacgatgagaggtgtgagaagaaa
gggaggaccagagattctaagagggggcttccctatggttcttatcagacaaccccctat
caaggccagggaggatccaggcaactgcagagctacatgcagctgctacagaagcactca
tccctggagtattcccaaagccagctgagtctgctcagtgtctgtcgagatcctgtgcac
cgaagcggacgccctggggaaccccgtctggagtggaaggtcaaggtaagggctgacggc
acacgctacgttgcccggaggcctgctcgtgaccgcatcctgagggagcgagcactaagg
atcagagaggagaggagcggaggcatgaccacagatgacgacactatgagcgagatgaag
atgggccgctactggagcaaagaggagaggaagcagcacttggcacgggccagggagcaa
aggaagaggagggagttcatgcaaaagagccgcctcgagtgtctaaaggaggggccagcc
agtggagctgagggcaggaaagagatcaatatcttggaactcagtcacaaaaagatgatg
aagaaacgaaacaaaaagatcctggataactggatgaccatccaggagctaatgagccat
ggggctagagttccggagggctccaaagtacacaacgccttcttatctgtcacaactgtt
tag
DBGET
integrated database retrieval system
