Etheostoma cragini (Arkansas darter): 117938851
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Entry
117938851 CDS
T07493
Symbol
lamb1b
Name
(RefSeq) laminin subunit beta-1b
KO
K05636
laminin, beta 1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04510
Focal adhesion
ecra04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117938851 (lamb1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117938851 (lamb1b)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
117938851
NCBI-ProteinID:
XP_034719673
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All DBs
Position
23:3276325..3306884
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AA seq
1780 aa
AA seq
DB search
MSLIIHFVTALALWWPARAQLPEFGDVCTKGSCYPATGDLLIGRAHRLSASSTCGLKQPE
RYCIVGHLEDEKKCFVCDSRKPFNEDTNQDSHTIENLVTTFAHNRLKTWWQSENGVENVT
IQLDLEAEFHFTHLIMTFRTFRPAAMLIERSMDFGKTWQVYRYFAYDCESSFPGVPSGPM
ARVDEIVCDSHYSDIEPSTEGEVIFRVLDPVFQIEDPYSLRIQNMLKITNLRVKFTKLHT
LGDNLLDSRDDVIEKYYYSLYDMVVRGNCFCYGHASECAPMDGTTFDAEGMVHGRCACNH
NTEGLNCERCQDFYHDMPWRPAEGQNTHACKKCECNHHSTSCHFDLAVYMTTGNISGGVC
DDCQHNTMGRQCEQCAPFYFQHPNRDLRDPNVCEPCNCDPSGSLQGGLCDSHNDVAAGMI
SGQCRCKANVEGERCDNCKQGHYGLGQGPHGCLPCTCNPLGTLPGGNPCDSDTGRCFCKR
LVDGHNCDQCLPQHWGLSNDMDGCRSCDCDQGGAVNNNCNPQTGQCVCREHMFGRRCDQV
ESGFYFIALDHYTYEAEDAKHGPGVTVVPRPYPLDRSPTWTGMGFVNMPEGAYLEFIINN
IPESMDYDILIRYEPQLPDQWEQVNIRVQRPVYNPPNYSSHCGNSIQGGDEQSISLPPGS
RHVLLVRPVCFEQGLNYTIHLSLPLYSSVSDVQSPYTLVDSLVLIPRVRELDMFHGVDGD
GAWDTFQRYRCLESSQSVVKSPLTDICNNYIFSVSALLHKGAIACQCDPQGSLSALCEPS
GGQCRCRSNVVGRNCDHCAPATFLFSPNGCRSCECDARGSIDAFCHEATGQCECVPGATG
RQCSHCLPGFWGFPQCRACQCNGHSEYCHPQTGECQGCRDFTTGHHCERCLDGYHGNPVL
GSGGNCRPCMCPDGPRSGRQFSDSCYLMANSNQLVCVCSPGYKGARCDECAPGYFGNPLV
PGGRCMPCQCSSNIDMHDPGSCDARTGACLKCLYHTEGYGCQHCKQGYYGNAATQSCRKC
MCYSAGTSPQSCSSLDECQCNQHSGQCPCQPNVVGQNCDRCAVDTWNIASRTGCQSCNCH
PVHSSGSSCDEVTGQCLCKPGFGGKTCRECRELFWGDPEVKCHACDCDSRGISSNQCHRA
TGQCACVKGVSGQRCDECARGYMGEFPTCKPCHQCFAVWDTVVGELTNQTQRLEAQVTQL
QTSGVTAPYKELVASLERNAKAVREIVENNPAAVKLEKIQDLMHQITGVMSYLNGKLNTT
EETLNILHSDANATDANLDALTAEANQLELSVQDLRQQVHKAKNANIQGAMDTIAAAHMQ
STTAELRANTSTSHPGNTVEGSATVRKATEDKLTGAQKEFDRKHQRNSQKLDKLSTELDK
FDLSPLSKKTCGGAAEGDGCPGSPCGGLGCVGKDGVLHCGGEGCGGLVTTSQTAHKSAKE
LDQEIVTAMQEVDKLSRMVWEANSRANEAKVNAMDVLIKSNQSKQRVEQNNEQLRNLIKE
IRDLLTNEKADVSVIEAVANEVLALEMPTSTEKLKELTEEIRERVRTLTSVETILSQSAD
DIQAAETLLKQAKAASEEASNMKETADIVKAALVETERAQSIAMDAIQLAQNNTKGTLEL
LISVESETAMSELKLGNTTGRLVQLEMEVGLLRQNNFDVDRLAKTADMTTDQARLNAEEA
QQEFDTEVRDKMVEVEDLVEDKGDSVLQARRRADMLQKEAKELLAQSRIKLQELGELESS
YEANQLILEAKAAELAELEQTARRLLEEISYKVTLYSTCL
NT seq
5343 nt
NT seq
+upstream
nt +downstream
nt
atgtcactcataatccactttgtaacagctttggcactgtggtggcccgccagggcccag
ctgccagagtttggggatgtttgcaccaaagggagctgctaccccgccacaggtgacctg
ctgatcggccgcgcgcacaggctcagcgcctcctccacctgcggactcaagcagccggag
cgctactgcatcgtcggacatctggaggacgagaagaaatgttttgtgtgcgactcgagg
aagccgttcaacgaggacaccaaccaagacagccacaccattgagaacctggtcaccacg
ttcgcccacaaccgcctcaagacctggtggcagtcggagaacggtgtggagaatgtgacc
atccagctggacctggaggccgagtttcacttcacacaccttattatgaccttcaggacg
tttaggccagctgccatgttgatcgagcggtccatggactttgggaaaacatggcaggtt
tatcgttactttgcctacgactgcgagtcatccttccccggtgtgccctccgggccaatg
gccagagtggacgagatagtctgtgactcccattactcagacatcgaaccatccacagag
ggagaagtgatatttcgggtgctggaccccgtctttcagattgaggacccctacagcctg
aggatacagaacatgctgaagatcactaatctccgggtgaagttcaccaagctccacaca
ttgggcgacaacctgctcgactcccgcgacgatgtgatagagaagtactactactccctc
tatgacatggtcgtccgtggcaactgcttctgctacggtcatgcctcggagtgcgccccc
atggatggaacaacatttgatgctgagggcatggtccatggccgctgtgcatgcaatcac
aacacagagggattaaactgtgagcgctgtcaggacttttaccatgacatgccttggaga
cctgcagaggggcaaaacacccacgcctgcaagaagtgcgagtgtaaccatcactccaca
tcgtgtcacttcgacctggccgtgtacatgacaaccggcaacattagcgggggcgtgtgc
gacgactgtcaacacaacacgatgggccgacagtgtgagcagtgtgcacccttctacttc
cagcacccaaaccgagacctcagggaccctaacgtctgtgaaccgtgtaactgtgacccc
tccgggtctctgcagggcggactgtgtgactcgcacaatgatgtagccgccgggatgatc
tcaggccagtgtcggtgcaaagccaatgtggagggcgaacgctgcgacaactgcaaacag
ggacactacggactgggacagggacctcacggctgcctgccgtgtacctgtaacccgctg
ggaactctgcctggaggaaacccctgtgattcagacacagggaggtgcttctgcaaacgc
ctcgtcgacggacataactgcgatcagtgtctgccgcagcactggggtctatccaatgac
atggacggctgcagatcatgtgactgcgaccagggtggggctgtaaacaataactgtaat
cctcaaacaggacagtgtgtgtgcagggagcacatgtttggacgacgctgcgatcaagtc
gagtctggcttctactttatcgctctggatcactacacctacgaggcagaagatgccaag
catgggcctggtgtgacggtggtaccgaggccttaccctctggatcgcagtccgacatgg
accggtatgggttttgttaatatgccagaaggagcttacttagagttcatcattaacaac
atcccagagtccatggactatgacatccttattcgctatgagccccagctgccagaccag
tgggagcaggtgaacatccgagtgcagcgccccgtctataaccctccaaactactcctct
cactgcggtaactccatccagggcggagacgagcagtccatctctcttccccctggatcc
agacacgtgttgctggtgagaccggtgtgttttgagcaaggactgaactacacgattcat
ctctctctgcctctctactcttcagtcagtgacgtccagagcccgtacacactcgtcgac
tccttggtgctgataccccgggtcagggagctggacatgttccatggggtcgatggtgat
ggagcgtgggatacgttccagcgctaccggtgtctggagagcagccagagcgtcgtcaaa
agccccttgaccgacatctgtaacaactatatcttcagcgtctctgctctgctccacaaa
ggagccattgcatgccagtgtgaccctcagggttcactaagtgctttgtgtgagcccagt
ggaggtcagtgccggtgtcgatccaatgtggtcggcaggaactgcgaccactgtgccccg
gctacgtttctcttcagccccaacggctgcaggtcttgcgagtgtgacgctcggggttcg
atcgacgccttctgccacgaggcgacgggccagtgtgagtgtgtccctggggccacaggg
cgccagtgttcccactgcctgcccggcttctggggcttccctcagtgtagagcgtgccag
tgtaacggccacagcgagtactgccaccctcagactggagagtgtcaagggtgcagagac
tttaccactggacaccactgtgagaggtgtttggacggttaccacggcaacccagtgttg
ggttcaggtggcaactgtcgcccctgtatgtgccccgatggaccgcgcagtggacgccag
ttttctgacagctgttaccttatggctaatagtaaccagcttgtgtgtgtgtgcagccct
ggctacaaaggtgccaggtgtgatgagtgtgctcccggttacttcgggaaccctctggtg
cccggtgggcgctgcatgccctgccagtgcagcagcaacatcgatatgcacgacccgggg
tcctgtgacgctcggacaggcgcctgtctcaaatgcctgtaccacactgagggctacggg
tgtcaacactgcaaacagggttactatggcaacgctgctactcagagctgcaggaagtgt
atgtgttactcagcgggcacatcacctcagtcctgttcctcccttgatgagtgtcagtgt
aatcagcacagcggtcagtgtccctgccagccgaacgtggtcggtcagaactgcgaccgc
tgtgccgttgatacgtggaacatcgccagcaggacgggctgccagagctgcaactgccac
cccgtccactcttctggatcctcctgcgatgaggtcacaggacagtgcttgtgcaaaccc
ggttttggtgggaagacctgtcgggagtgcagagaactcttctggggggatccagaggtc
aaatgtcatgcttgtgactgcgattctcggggaatctccagcaatcagtgccatcgtgcg
acaggtcagtgcgcctgtgtgaagggcgtgtccggccaacgctgtgacgagtgcgccaga
ggctacatgggtgagttccccacctgtaaaccctgccaccagtgctttgctgtgtgggac
accgtggtgggcgagctgaccaatcaaacccaacgtctggaggcccaagtgacacagctg
cagaccagcggggtgacagcgccatataaagaactggtcgccagcctggagagaaacgcc
aaagctgtcagagaaatagtagagaataaccctgctgcagtgaagctggagaagattcag
gacctgatgcaccagattacgggtgtgatgtcctacctaaacggaaagctgaacacgaca
gaggagaccttgaacattctccacagtgacgccaatgccaccgatgcaaacttggacgcg
ctgactgccgaggccaaccagctggagctgagtgtccaggacctgagacagcaggttcac
aaagcaaagaacgccaacatccagggtgccatggacactattgcagctgcacacatgcag
tctacgacagcagagctccgcgccaacacctccaccagtcatcccggaaacacggtggag
gggtcagccacagtacggaaagccacggaggacaaactgaccggcgctcagaaggaattt
gaccgcaagcaccaaagaaactcacagaagctggacaaactgtccactgagctggataaa
tttgacctgtcaccacttagcaagaagacatgtggtggtgcagctgaaggggacggctgc
cccggctccccctgtggtggtttgggttgcgtcggcaaggatggagtccttcactgtggc
ggagaaggatgcggaggcctcgtcacaacctcccaaactgctcacaaatcagccaaagag
ttggaccaggagatcgtcacagcgatgcaggaggtggacaagctctccaggatggtgtgg
gaagccaacagccgcgcaaacgaagccaaggtgaatgctatggacgtgctgatcaaatcc
aaccagagcaaacaaagagtggagcagaacaacgagcagctccgcaacctcatcaaagag
atacgagacctgctcaccaatgagaaggcagatgtgtcagtgatcgaggctgtggccaac
gaggtgttggctctggagatgccgacctcgacagaaaagctgaaggagctgacggaggag
atcagggagagggtgcgaactctgaccagtgtggagaccatactcagtcagagcgctgac
gacatccaggctgcagagacgctcttgaaacaggccaaggctgccagtgaagaggcgtct
aacatgaaggagacagcagacatagtgaaggcagccctggttgagactgagcgtgctcag
agtatcgccatggacgccatccaactggcccagaacaacacaaaggggactctggaactg
ctgatctctgtggagtcggagacggcgatgtcagagctgaagctcggtaacaccacaggt
cgtctggttcagctggaaatggaggtcggcctactgagacagaacaactttgacgtggac
cgcctggcaaagacggcagatatgaccaccgaccaggccagactgaacgccgaggaggcc
cagcaggagtttgacaccgaggtgagggacaaaatggttgaggtggaggacctggtggag
gacaaaggggactcggtgctgcaggcgaggagaagagcggacatgctgcagaaggaggcc
aaagagctgctcgcccagagcagaatcaagctgcaggaactgggagagttggagagttcc
tacgaggccaaccagttaatcttggaggcaaaagctgcagagctggccgagttggagcaa
actgcccgtaggctcctagaggaaatcagctacaaagtgacgctgtacagcacctgtctg
tga
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