Etheostoma cragini (Arkansas darter): 117939155
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Entry
117939155 CDS
T07493
Name
(RefSeq) collagen alpha-1(VIII) chain-like
KO
K23455
collagen type VIII alpha
Organism
ecra
Etheostoma cragini (Arkansas darter)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
117939155
NCBI-ProteinID:
XP_034720101
LinkDB
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Position
24:9237798..9256916
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AA seq
743 aa
AA seq
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METAPLHSFHLLIIVQLCLLHLAHGGAYYGHKQPPQHHQPLPQYNDGYPQQQFLGNEMPH
LPYGKEVPIIPQYGKELPQLPLQIGKERPLTKGKGQTFPRGAKGPPPLGPGGEGIREGPQ
GVQGPPGPTGPPGPQGPPGLPGQGLPGLPGKPGPPGPQGYPGIGKPGMPGVPGKPGGPGL
QGSKGDLGPNGGEGPTGLPGPAGLPGPPGLPGFSKPGGQGLPGQLGPLGEPGQKGPPGSP
GPPGPKGDKGNGQPGLPGLKGPSGPPGIPGNVGVPGVGKPGLNGLPGQPGIPGKLGPPGE
SGLAGPPGERGQPGPPGLPGIGKPGKDGFRGQPGISGGKGESGLPGLPGGPGLPGYGKPG
FPGPKGHKGHAGLPGPPGLKGDKGHGGLPGVIGSTGPSGMPGPPGPIGLPGSLGFPGQKG
EDGVVGPKGNPGMKGDLGPPGFPGEPGLSGGGGQPGTRGLQGPTGPKGEPGGRGLPGSPG
AVGLTGPRGEGGEPGDRGYQGPQGIPGLTGPGGPLGPPGLPGQKGETGQPGKPGYPGEGK
LGPAGQIGPQGNPGPMGPAGLPGQPGQPGPPGPQGLPAVSPELGQILPMTGPYPGQNQKK
PKNGGDIGGSGVEMPAFTAKLANPFPPVGSPVVFDKLLHNGNQNYNPQSGVFTCSIPGVY
YFAYHVHCKGGNVWVALMKNNEPVMYTYDEYQKGLLDQASGSAVLPLRQGETVHIQLPSD
QAAGLYAGQYVHSTFSGYLLYPM
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atggagactgcacccctacactctttccatctactcataattgtccagctgtgtttgttg
cacttggcccacggtggggcatattatggacataaacagccgcctcaacaccaccagcct
ctgccacagtacaatgatgggtatcctcagcaacagtttttggggaatgagatgccacac
ctgccttatggcaaagaagtgccaataattcctcagtatggaaaagagcttcctcaactg
cctctacaaataggcaaagagaggccactgactaaaggcaaaggacaaacatttcccaga
ggggctaaaggtccacctccccttggtcctggtggagaaggtatcagagagggaccacaa
ggagtccagggccccccgggaccaacaggaccacctggaccacaaggcccccctggacta
ccaggccagggattgccagggctaccaggaaaaccggggccgcctggtcctcaaggctac
ccaggtatcggaaaaccgggcatgccaggagtgccgggaaaacctggaggacctggatta
caaggatcaaaaggtgaccttgggcctaatggtggagaaggaccaactggacttcctggg
cctgcagggctcccaggtccccctggactcccgggattttcaaaaccaggaggtcagggg
cttcccggccagctgggtcctctaggggagcctggtcaaaaaggcccacctgggtcacct
ggtcctccaggccccaagggagacaaaggaaatggtcaacctggtttgccaggtttgaaa
ggaccaagtggaccaccaggtatacctggaaatgtgggtgtccctggggttggcaaacct
ggcttgaatggtctccctggacaaccaggaataccaggaaaacttggtcctcctggtgaa
tcaggactagctgggccacctggtgaaagaggccaaccaggaccaccaggcttacctgga
attggaaaaccaggaaaagatggtttcagagggcaaccagggatctctggtgggaaaggg
gaatcagggcttcctggtttaccagggggtccaggcttgccaggttatggtaaaccaggg
ttcccaggacctaagggtcacaagggacatgctggtcttcctggacctccaggcctgaaa
ggtgataaaggtcatggaggtcttccaggtgtcattggttctactggtcctagtggtatg
cctggcccaccaggaccaattgggctccctggtagtctcggctttccagggcaaaaggga
gaggatggtgttgtgggaccaaaaggaaatccaggaatgaagggtgacttaggtccccca
ggttttccaggagagccgggtctgtcaggtgggggtggacaaccaggaacaagaggttta
caaggccccactggccctaaaggtgaacctggtggtaggggtttacctggttcccctggt
gctgtgggattaactggcccaagaggagaggggggggagcctggagacagaggctaccag
ggaccacaaggtatcccaggacttacaggaccagggggaccacttggacctcctgggcta
ccaggacaaaaaggcgaaacaggccaacctggcaaacctggctatcctggtgagggaaag
ctaggaccagctggtcaaataggtcctcaaggtaaccctgggccaatgggccctgctgga
ctcccagggcaaccaggacaacctggaccccctggtcctcaaggacttcctgctgtatct
cctgaacttggacagatcctccctatgaccggcccataccctggccaaaaccaaaagaag
ccaaagaacggaggcgacattggtggaagtggcgtggagatgcctgccttcacagctaag
cttgcaaatccattccctcctgttgggtctcctgtcgtctttgacaaactcctgcacaat
ggcaatcagaactacaatccccaaagtggtgttttcacctgtagcattccaggggtctac
tactttgcttaccacgttcactgcaaagggggtaatgtgtgggtggccttgatgaagaac
aatgagccagtaatgtacacatatgacgaataccaaaagggcttgctggatcaggcatcg
ggcagtgctgtactcccgttacgacaaggagagactgtgcatatacagctgccatctgac
caggctgcaggactttatgctggtcaatatgtccattccacattttctggatacttattg
tacccaatgtaa
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