KEGG   Etheostoma cragini (Arkansas darter): 117939190
Entry
117939190         CDS       T07493                                 
Symbol
trim25l
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25 isoform X1
  KO
K10652  tripartite motif-containing protein 25 [EC:2.3.2.27]
Organism
ecra  Etheostoma cragini (Arkansas darter)
Pathway
ecra04622  RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:ecra00001]
 09150 Organismal Systems
  09151 Immune system
   04622 RIG-I-like receptor signaling pathway
    117939190 (trim25l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ecra04121]
    117939190 (trim25l)
Enzymes [BR:ecra01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     117939190 (trim25l)
Ubiquitin system [BR:ecra04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    117939190 (trim25l)
SSDB
Motif
Pfam: PRY SPRY zf-C3HC4_4 zf-RING_UBOX zf-C3HC4 zf-C3HC4_3 zf-B_box zf-C3HC4_2 RING_XB3-XBAT31 zf-RING_2 ANCHR-like_BBOX zf-RING_5 DUF948 Exonuc_VII_L U-box zf-RING_6 Hydantoinase_B HisKA Bacillus_HBL
Other DBs
NCBI-GeneID: 117939190
NCBI-ProteinID: XP_034720139
LinkDB
Position
24:3302449..3308659
AA seq 828 aa
MSAKLWTEEQFNCPVCLDLPNDPVTIPCGHSYCMACIKDYWSKDDPKGVYSCPQCRQSFS
PKPSLSRNTMLAEAVEQLRKGARTADVRESMRSARGVAAASRSRSKGKLSSSAVPCDMCK
GEERAAVKSCLMCMSSFCETHLKPHQTKKALNQHELIAPTANLAEKICTQHKYLQEFFCR
QCKVFVCWLCTSNQHKGHECVSTKAERLEKQKVMSEMYAENQQKLKDREQELKDMKKMMD
VTKRSLDGMHEDTEQVLSELQHSVERLQELLEEVLHQASLEKMGHAQEVANSLQAEIKEL
QKRDMEMKDLALCEDHIYYLEKYESMCYPLETGDLPAVLVNLDASFEPAREAILDLRDRV
EDLCNQELSKITKQVNDTALFTLRDSNRSAGQKGGIFKLFSGLSSRNTNSRSPATPPSIS
AGARSADRRGLGIGLKSQDVRSRDTPRVDRGNTNSPRLRNRQRGEERETVRETNSRPSPS
PTPNRRESPSLWSRSSQSQAVPAAAPTPTQMPATPTPAQAPTPAPVQAPTPAPTPAPAST
GGSSFSRMASISSLFRSHRRGTKQATIASPDNTLSPGGNPRGMAALPETPTEINPGLFLD
SPTPGTMDNAPAFPALRELNIDSIQAPEPRTREEFLQYSVTLTLDSNTAHRRLALSDGNT
KATLQVAAQPYPDNPQRFDGWTQVMCQSPLYAQRCYWEVEWRGRGSSIGVVYGALHRKGS
DARSGLGYNAQSWTLELSDTCCSAMHDNEKKDIPVTYSPRLGIYLDLSTGTLAFYSVAES
MTHLHTFRANFTQPLYAAFGVGSGVGVGLDFALGQFSSSSDSIKICPM
NT seq 2487 nt   +upstreamnt  +downstreamnt
atgagtgctaaactgtggacagaggagcagtttaactgccctgtgtgcctggatctccca
aatgatccagtcaccatcccatgtggtcacagctactgcatggcctgcattaaggactac
tggagcaaggacgaccccaagggggtgtacagctgcccccaatgccgccagagcttcagc
cccaagccctccctgtccaggaacaccatgctggcggaggctgtggagcagctccgcaaa
ggtgcccgcacagctgacgtccgtgaatccatgcgaagcgcccgaggggtcgccgccgca
tccagatccagatccaaagggaagctgtcctcctcagcagtgccgtgcgacatgtgcaaa
ggagaagaacgagcggcggtcaagagctgcctaatgtgcatgagctcattctgcgagacg
cacttgaagccccaccagaccaagaaggccctgaatcagcatgagctgatcgcacccacg
gccaatctggctgagaagatctgcacccagcacaagtacctgcaggagttcttctgtcgc
cagtgtaaggtgttcgtttgctggctgtgcaccagcaaccaacacaaaggccacgagtgt
gtgtccaccaaggctgagcgcttggagaaacagaaagttatgtccgagatgtatgcagag
aatcagcaaaaactgaaagaccgagagcaggagctgaaagacatgaagaagatgatggat
gtgacaaagcgttctttagacgggatgcatgaagacacggagcaggtgctgtcggagctg
cagcactcggtggagcgcctgcaggagctgctggaggaggtgctgcatcaggccagcctg
gagaagatgggacatgctcaggaggtcgccaacagcctgcaggctgagattaaggagctg
cagaagagggacatggagatgaaggacctagcgctctgtgaggaccacatctattacttg
gagaaatacgagtccatgtgctatccgttagagacgggggacctgcccgctgtgttggtc
aatctggacgcttcctttgagccagcacgagaagccatcttagacctcagggaccgagtc
gaggacctgtgcaaccaggagctgagcaagatcaccaaacaagtcaatgacacagctctg
ttcactttgcgagactccaaccgcagcgcaggacagaaaggagggatttttaaattgttt
tctggtctgagttctcgcaacacaaacagccgctcaccagctactccacccagtatttca
gcgggagcacggagtgcagacagacgaggacttggtataggcctcaaaagtcaagatgtg
aggagtagagacacaccacgagtagacagaggaaacacaaactcacccagacttcggaac
agacagaggggggaggaaagagagaccgtgagggagaccaactccaggcccagccccagc
cccactcccaaccgcagagagtctccgtctctttggagcaggtccagtcagagccaggct
gtccctgctgcagccccgactccaactcaaatgccagccaccccgactcctgcccaagct
ccaactccagcccctgtccaagctccaactccagctccaactcctgccccagcatcaact
ggagggtctagtttcagtcggatggcatcgatcagcagtctcttccgctcccatcggcgt
ggcaccaaacaggccaccatagcttcccccgataacacactgtcaccaggaggaaaccca
cgggggatggctgctctgcctgaaacaccgacagaaattaaccccggactcttcttggac
tcacccacccccggcaccatggataacgctcctgctttccctgcattgagagaactcaac
atcgacagcatccaggccccagagccgaggaccagagaggagttcctacagtactctgtg
acgttgacccttgactccaacacagcccaccgacggctggctctctccgacggcaacact
aaagccaccctgcaggtggcggcgcagccctaccctgacaatccgcagcgttttgatggc
tggacccaggtgatgtgccagagccccctgtatgcccagcgctgttactgggaggtggag
tggagaggccgaggctcctctataggtgtagtttacggagcattacacaggaagggctca
gacgcccggtcggggctcggttacaacgcccagtcctggaccctggagctgtcggacacc
tgctgctctgccatgcacgacaatgagaagaaggacataccagtcacctactccccccgc
ctgggcatctacctggacctgtccactgggacgctggcgttctacagtgtggcagagagc
atgacacaccttcacaccttccgcgctaacttcacccagccgctctacgctgccttcggg
gtgggcagtggagtcggggttggtctggactttgcccttggccagttcagctccagctct
gacagcattaagatctgtcccatgtga

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