Etheostoma cragini (Arkansas darter): 117939219
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Entry
117939219 CDS
T07493
Symbol
rp1l1a
Name
(RefSeq) retinitis pigmentosa 1-like 1 protein isoform X1
KO
K19538
retinitis pigmentosa 1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ecra03037
]
117939219 (rp1l1a)
04812 Cytoskeleton proteins [BR:
ecra04812
]
117939219 (rp1l1a)
Cilium and associated proteins [BR:
ecra03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
117939219 (rp1l1a)
Cytoskeleton proteins [BR:
ecra04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule-associated proteins (MAPs)
117939219 (rp1l1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCX
Motif
Other DBs
NCBI-GeneID:
117939219
NCBI-ProteinID:
XP_034720216
LinkDB
All DBs
Position
24:complement(3788084..3800689)
Genome browser
AA seq
2690 aa
AA seq
DB search
MYSVEAGMWDPQPPSKHASSLSPRPPSNLRPAHVIAAPPAKRITFYKSGDSQFEGVKMAI
QKRSFKCFDTLLDDLSQKVPLPFGVRTVTTPRGTHAIKHLEQLQDGGCYLCSDRRQAKPV
NMELAGKRPTIWYHHSRRPQQPESSSGTPPGHQSYRQRRILLVKNSEPGMRRSVVLSRRS
TRSLKSFLDEVSEVMQFHVRKLYTAEGRRIDSVQNLMTCPGTLVCVGREAFSPLLINFIR
KSSEEKLPGLGSRGPALGPRTPGNGARSPATQGARSPPRGAQSRASEYSEGQESRKNANF
GLETKKSIIHPRSDSSNRSTRFSLSSEKSYSNGFSAYSQARPAIMNDDIEKRVLVNKDGS
LSVEMRVRFRLHNDETLQWSTQLKKSPSLTNECCPLSQAQPHYLQQCQSESCSDPDSTSF
DPEGVDYSNQPAQCLLEGNQCPCCYQRQEQQYDLWENPAHSQKQHPVPPPHPPSHSHTLL
RHTHSSSSSSSCNSRRVVRCRERITNCGTGSKQSQLVQEEMFVTEQVERRVELEKNGDTH
VEVCRMSRCCSRSEMVAFDSKLRPLSRKSVEDDLLMGEDGDRPLSAISSSSHILQSLQED
QDDDLPPSASQCCQCNEPCPSPTSQTHLSNKPTSSVAAGSVHSTEHKKQEEERESKTVSV
ASSCQCGAATPHSTAEAEGMDRAPSSKSKTSRASSRSSKVRIPNSEEEGAADDEDEDVQR
VVSGLSGRTGCSLQSRGSNICPNCGGCKSGVNSESNSRASQRSMHSHRASPMQATPLSSQ
ENANNGSDDDGSENSVGSTKSNKNNLTNNGRCSAISNIQEHRASSAMSRMSHPEEAGKEE
ERALSATSATSHRSNRSCKSGYNDSPCGTEQKDRSPSAISAQSNKSGRSHKSNYSCTAGE
PDIKTTEEAKEANTEERALSSLSAKSGASAETSASVKKGTKVASPPDNTAVEDDDTNKRT
SSALSDTPGEAERSDSVMSAKSAKSYVSAKSGTSHRSICIHCARAVFQADVPVIEATEQE
EEMESEERAASAMSGKSNLSAKSNKSHKSIKAGEDGEERAASQASCRLVKSKIFHKNDNE
TAASPSSKEKENEQGEDEQPESVISAKSAKDTAKTQVDNIEDRTPSTMSSKSHISAKSSK
SQKSNQTTASPNPNEADMPSIEINGKEEHNENQERVASALSVKSKSSIKSHTSQKSSKNL
KLVSPSPNVVTFQPPEGVDEDENEKTERAQSAASAKSEKSSVSTSSHKSRHKRSADFAVI
KRADADENVEENSTKSTSHGQTLLPRGSCSPLTHSPKAASPSRSSRSGRSKYGCGAASAL
EKSKEEKEGEKKEDPEELEDKEASEQDSILSSSSRRHSRESGGTEQPLSRNSSGSVSLGL
PEDQEIADSDSGKSCVSFHTNTEKKGRVKTVTPDVPKSSEQSALKEEREETGSITSQKSS
SKSAHNHIPTFKTTGGSRDKGEEGGKQTTERGASSLSKSSKSNKSSCSCGNKAPQTLDSK
SKQHTSASPTKAGNDPETASLKSASTTKASKMYANDNRTSSAMLAASAKGRSKSPASASA
ENTNVARDSGDNAAAIQAISRPASKAEWEEDNADNKAAGVQSKSPCSLRPDSAVSTHSDS
KMKASKQSKAKSSTGPSSKVETFSGSTLHHSTSAADMLKETMAAAAAARSNSQQSMASKT
SDKSRSKRSQRSRNQTDQEELELSPACLPNASPNEVVSDWLRSIPANSCMLALGDGLNEE
EQEKVEEEKPGEEEAKEEGNLEEGKVEDKKEGVEANKEEQKEEEAEFDAAEEEKSPDSAP
GGGDAAGTLPKSWHSSVAVMKVLLSSSPGRCHSMPEVSPVYGRRLSTSARGFLDCLAQLQ
LIEPKGTPGFDQEKDRNQQYEDIMAILQSLWLTVTRDIATKETKDVGTEQVTPPRSSSGV
GMSSGSGGSGKENGTQGGDETNQNKTKESSLHEGEEGGAEKVVEEEEKGNAEAEHKETEA
EPEETEVADEEVQSTVPPILDSPKVSENPLSLEKSSANNSSKSPTDNEQETAEDSGSSGT
PPTVLRAPLSKRLSQDPDPVWVLNLLKKLEKQFMDHYINAMAEFKVRWDLDDNLMLDTMI
GELREEVSRRIQSSVEREVRKIQSRAGRGGKFPRPPQRPDLSRESTVTEKRRQILKVMKK
KSVKTADCLSDEDMTAEFSDQRSDDEYCPCDACVRKKMAARPLQANPLAAKAPVMMEFDL
LKILQLKKTPAPAVVLQSAEMEIDCDSEGRNLEVVQEEEEEEETKEDIKAKVVLEETIPE
EDEETGNDGGEAGDDEEEEEEAEQEESIAGGEDQEEKETAGEEPGEEETSGNEEEEAECQ
CQCARNEEESDKAEDGEEETAEEEAAEETRDNAAEDETGDDEERTGEEQGENKEDGETGT
EKEEDEEEEEEVESDKETVKEVTAGEGETTEKGEGEEEEAEVEDIEVSEFEEEDEGKEGE
DEGKKEQEETTGKESGEDEDSGETEDNSAAKNEEEFVEGNVSASAEDEDEGDDASGEGES
HEDEKEGESEEPGYEASEEERTSLKGQGVVVTEGDESHAEESNTDSKRPSDTSVAESGHE
GAGATEDEEGTEGGEGGAEANDTVDEEEDGEVDKRENGVLFHQFTRTSVESQPGSLEDID
TESPNNLVNSTEVPKRAACVCGGVWTGQRRSRSPGRVKRSKPKECDVELN
NT seq
8073 nt
NT seq
+upstream
nt +downstream
nt
atgtactcagtcgaggcagggatgtgggacccccagcctccgtctaaacatgcctcgtcc
ctctccccgcgacccccctccaacttacgccctgcccatgtgatcgcagccccccctgcc
aaacggatcaccttctataaaagcggcgacagccagttcgagggtgtcaaaatggccatc
caaaagcgcagcttcaaatgtttcgacaccctgctggacgacctttcccaaaaggtgccc
ttgccatttggcgtgcggactgtgacaactccccgcggcacccacgccatcaaacacctg
gagcagctccaggacggtggctgctacctctgctcagaccggcgccaggctaagccagtc
aatatggagctggccggcaaacgtccgaccatctggtaccatcacagccggaggccccag
cagcccgaatcctcgtccggaacaccgcccggccatcagtcttacaggcagcggcggatc
ctgctggtgaagaacagcgagccggggatgaggagaagcgtggtgctgagcagaaggtca
accaggagcctgaagtcctttcttgatgaggtgtcagaggtgatgcagtttcatgtacgc
aagctctacactgctgagggacgaaggattgacagcgtacaaaacctgatgacttgtcct
ggtacgttggtgtgtgttggccgggaagccttcagcccattgttgataaacttcatcagg
aagagctcagaggaaaaactgcctggtctgggcagcaggggccctgctcttggccccagg
actcctggaaatggggccagatctcctgctactcaaggagcaagatccccacctcgtgga
gctcagtctagagccagcgaatacagcgaagggcaagaaagcaggaaaaatgctaacttc
ggtctggaaaccaaaaaaagcataatccatcctcgttcagattcctcaaaccgctccacc
cgtttctccttgtcttcagagaagtcatacagcaatggtttcagcgcctactcccaggcc
agaccagctattatgaacgatgacattgaaaagcgtgtcctggtcaataaagacggcagc
ctgtcagtggagatgagggtgcgtttccgcctacacaatgacgagaccctgcagtggtct
acacaactcaagaaatccccatctctgactaatgaatgctgccctctgagtcaggcccag
ccccattacctgcagcagtgccaatcagagagctgctctgatcctgattccacatccttt
gacccagagggtgtggattattctaatcaacctgcgcagtgtttgttggaggggaaccaa
tgtccttgctgttaccagagacaggaacagcagtacgacttatgggaaaacccagcacac
agccaaaaacagcaccctgtacctccaccacatccacccagccactcccacactctgctg
agacatacacactcttctagctcttcctcgtcatgtaattccaggagggtggtgcgctgt
cgagaacggatcacaaactgtggcacaggttcaaagcagagccaactggtccaggaggag
atgtttgtgacggagcaggttgagcgcagagtagagctggagaagaatggagatacccat
gtcgaggtgtgcaggatgagccgatgctgcagccgcagtgaaatggttgcctttgatagc
aaactacgaccacttagcaggaagtcagtagaggatgacctactgatgggggaagatggg
gaccgtccactgtctgcaatcagtagctcctctcatatccttcaatcactgcaagaggac
caggatgatgacctgccacctagcgcctcacaatgctgtcaatgcaatgaaccctgtcct
tccccaacttcacagactcacctgagcaacaaaccaacaagcagtgtcgcagctggttct
gtccactcgacagaacacaagaagcaagaggaagagagagaaagcaaaacagtatctgta
gcctcttcctgtcagtgtggagcagccaccccacattcaacagctgaagcagaagggatg
gatcgagctcccagctccaagtccaaaacgagcagagcctcaagcaggtccagcaaagtc
cgcatcccaaactcagaagaagagggggctgcagatgatgaggatgaagatgtacagagg
gttgtcagtggcttgtctggtcgtacaggatgttctctgcaatcaaggggatccaatata
tgtcccaattgtggcggatgcaaaagtggggtcaactctgaatccaatagcagagcatca
cagaggtccatgcattcccaccgagcctctccaatgcaggccacacctctttccagccaa
gagaatgcaaataatggcagtgatgatgatggctcggaaaattcagttgggtccacaaaa
tccaacaagaacaacctcaccaacaatggccgctgctctgcaatatcaaacatccaggag
cacagagcatctagtgccatgtcaagaatgtcccatcctgaggaagcaggaaaagaggaa
gaaagggctttgagtgcaacctcagccacaagccacaggtccaatagatcatgcaaatct
ggctataatgacagtccttgtggcacagaacaaaaggacagaagccccagtgcaatatcg
gctcagtccaacaagtccggcaggtcacacaagtccaactacagctgcaccgctggcgag
cctgacataaagacaacagaggaggcaaaagaagcgaacactgaagaaagagcacttagc
tccttgtcagccaaatctggtgcctcagcggagaccagtgcttcggtcaagaaaggaact
aaggttgcctcaccacctgacaatacagctgtggaggacgatgacacaaacaaaagaact
tccagtgccctatctgatacgcctggtgaagcagaaagatcagatagtgtcatgtctgct
aaatcagctaaatcttatgtgtcagcaaagtccggcacatctcacaggtctatttgcatt
cactgtgcaagagcagtatttcaagctgatgtccccgttatcgaagcaacagaacaggaa
gaagaaatggagtcagaggagagagcagcgagtgccatgtcaggcaaatctaatctttct
gccaaatctaataaatcccacaagtccatcaaagctggagaagatggagaagaaagggca
gcgagtcaagcatcatgcagattagtcaaatctaaaattttccacaaaaatgacaatgaa
accgctgcatctccaagctccaaggaaaaggaaaatgagcagggagaagatgaacagcct
gaaagtgtaatatctgctaaatcagccaaagacacagcaaagacacaggtagacaacatt
gaggacagaacacccagcaccatgtctagtaaatcacacatctctgcaaaatcctccaag
tcccagaagtcaaatcaaacaacagcatctccaaatccaaatgaagccgatatgccttct
attgagataaatggaaaagaggagcataatgaaaatcaagagcgggtggccagtgccctg
tctgtcaagtcaaaatcttctataaagtcccatacttctcagaagtctagtaagaatctc
aaacttgtgtcaccaagtccaaatgttgtcacctttcaaccaccagagggggttgatgaa
gatgaaaatgagaaaacagagagagcacaaagtgctgcatctgctaaatcagagaaatct
agtgtttcaacttcatcacataagtctcgccataagagatcagcggattttgctgtcatt
aaaagagcagatgcagatgaaaatgtggaagaaaattcaacaaaaagtacatctcacgga
caaacgctcttacccagggggtcatgttccccactgacccactcacccaaagctgcatcc
cccagcagatctagcagatctggcagatcaaaatatggctgtggagcagcttcagcactt
gaaaagtcaaaggaagaaaaagagggggagaaaaaggaagatcctgaggagcttgaagat
aaggaggcttctgagcaggacagcatcctgtcgtcctcaagcagaaggcacagtagagaa
tcaggaggcactgagcagccactgagtcgaaactcatcaggctcagtctctcttgggttg
ccagaagaccaggaaatagccgactcagacagtggcaagtcctgtgtttcttttcacaca
aatactgaaaaaaagggcagagtgaagacagtaactcccgatgtccccaaaagctcagaa
cagtccgccttgaaggaagaaagggaggaaacggggtccatcacatctcaaaagtccagc
agtaaaagcgctcacaatcatatccctacttttaaaacaacaggggggagcagggataaa
ggtgaagaaggtggcaagcaaacaacagagagaggagccagctcattgtcaaaaagcagc
aagtctaacaaatcttcctgtagctgtggcaacaaagcacctcaaacgcttgacagtaag
tcaaagcaacacactagtgccagcccaaccaaagcaggaaatgaccctgaaacggcaagt
ttgaagtcagcttcaacgacaaaagctagcaaaatgtatgccaatgacaacaggacatca
tctgcaatgttagcagcaagtgctaaaggtcggagtaaatcccctgcaagtgccagcgct
gaaaataccaatgtagctcgagattcaggagataatgccgctgcaattcaggccatcagt
agaccagctagtaaggccgaatgggaagaagataatgcagacaataaggcggcaggtgtc
caatccaagagtccctgtagcctcaggcctgattcagcagtttcaactcactcagactcc
aagatgaaagcctcaaagcagagtaaggccaaatccagcaccggaccaagcagcaaagtg
gagacatttagtgggagcactctgcatcactctacgtctgctgctgatatgctaaaggaa
accatggctgctgctgctgctgcacgttcaaacagccaacagtccatggccagtaaaacc
agtgacaagtccaggagtaaaaggtctcagaggagcaggaaccagacagatcaggaggaa
ctggaactgtcacctgcctgtctgcccaacgcttcccccaatgaggttgtcagtgactgg
ctgcggagcattcccgctaacagctgcatgctcgcacttggtgatgggctgaatgaggag
gagcaggagaaggtggaggaagagaaacccggagaagaagaagcaaaggaggagggaaat
ctggaagaggggaaagtggaagacaagaaggagggtgttgaggcaaacaaggaagaacag
aaagaggaggaggctgaatttgatgcagcagaggaggagaagagtccagattcagctcca
ggtggtggtgatgctgcggggactctacccaaaagttggcattcttcagttgcagtgatg
aaagttcttctgagctcctctccgggtcgatgtcacagcatgcctgaggtgtctccagtt
tatggtcgtagactgagcacatccgccagggggtttctggactgtttggcccagctccag
ctcattgagcctaaagggacccctggctttgaccaagagaaggaccgcaaccagcagtat
gaggacattatggccatccttcagtctctctggctcactgtaaccagagacattgcgacc
aaggagaccaaggacgttggcacggagcaggtgactccaccgaggtcctcatccggggtg
ggaatgagcagtggctctggcggatcagggaaggagaatggaactcaaggtggagatgaa
acaaatcaaaacaaaacaaaagagtcctctttacatgagggagaagaagggggagcggag
aaggttgtagaagaggaagagaaaggaaatgcagaggcagaacacaaggaaactgaggca
gaaccagaggagacagaggttgcagatgaagaggttcagagtacagtccctccaattctg
gacagcccaaaagtctctgagaatcccttgtcattggaaaagagctctgccaacaacagc
tccaaatcccccacggataacgaacaagagacggcggaggactcaggcagctcaggcaca
cccccgacagtcctgcgagcaccattgtcaaaacgactatcccaagaccctgatccggtg
tgggtcctgaaccttctgaagaagctggagaaacagttcatggaccactacattaacgcc
atggcggagtttaaagttcgttgggacctggacgacaacctcatgctggacaccatgatc
ggcgagctgagggaagaggtgagcagacgcatccagagcagcgtcgagcgtgaggtgagg
aagattcagagtcgcgccggcagaggggggaagtttccccggccgccgcaaagaccggac
ctctccagggagtccaccgtaacagagaagaggcgtcaaatattgaaggtcatgaagaaa
aagtcagtaaaaaccgctgattgcctgagcgatgaagacatgacggctgagttcagcgac
cagcgaagcgatgacgagtactgtccctgtgatgcttgtgttcgcaagaaaatggccgcc
cggcctctccaagctaacccgcttgcagccaaagcaccggtgatgatggagtttgacctc
cttaagattctgcagctgaagaaaacccctgcgcctgcagtcgtgctgcaatctgcagag
atggaaattgattgcgatagcgagggaaggaatttagaggtggtgcaggaggaagaggag
gaggaggaaactaaagaggatattaaagctaaagttgttttagaggagacaattccagag
gaagatgaggaaacagggaacgatgggggtgaggcaggagatgatgaggaggaggaggaa
gaagctgaacaggaggaaagtattgcaggtggtgaggatcaggaagagaaagaaacagct
ggagaggaacctggcgaagaggagacatcaggaaatgaagaggaagaggcagaatgtcaa
tgccagtgtgccagaaatgaggaggagagcgacaaagcagaagatggagaggaggaaaca
gcagaagaagaggctgctgaggaaacccgcgacaacgcagctgaggatgagacaggagat
gatgaagagagaacaggggaggaacagggggagaacaaagaggatggagagacaggaacc
gagaaagaggaggatgaggaggaagaggaggaggtcgagagtgacaaggagacggtaaaa
gaggtaacagcaggtgaaggagaaaccactgaaaagggcgagggtgaggaggaggaggcc
gaggtggaagacattgaggtgtctgaatttgaggaagaagatgaaggaaaggaaggagaa
gatgaaggaaagaaagaacaagaagaaacgacaggcaaggaaagcggagaagatgaggat
tctggggaaacggaggataacagcgcggcaaaaaatgaagaagagtttgtggagggtaac
gtcagcgcttcggcagaggatgaagatgaaggggacgatgcttccggagagggggagtca
catgaagatgaaaaggaaggagagagtgaggagccaggatatgaggcatcagaggaggaa
agaacctcattaaagggccagggggtggttgtgaccgagggtgacgagtcccacgccgaa
gaatcaaataccgacagcaagcgtccaagtgacaccagcgtggccgaatccggacacgag
ggggccggagccacagaagacgaggaggggacagagggcggagaaggtggagctgaggcc
aatgatactgtagacgaggaggaggatggagaggtggacaaaagggagaacggcgttctc
ttccatcagttcaccaggacctctgtggagtcccagcccggctctttggaggacattgac
acagagtcacccaataatcttgtcaactccacagaagtacccaaaagggctgcttgtgtg
tgcggtggtgtatggacgggccagaggaggagccgctcgccgggtagggttaaacggtcc
aaacccaaagagtgtgacgttgagttgaattga
DBGET
integrated database retrieval system
