Etheostoma cragini (Arkansas darter): 117939382
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Entry
117939382 CDS
T07493
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1-like isoform X1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117939382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecra04121
]
117939382
Enzymes [BR:
ecra01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117939382
Ubiquitin system [BR:
ecra04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
117939382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4_4
zf-C3HC4
PRY
Ig_DSCAM-DSCAML_C
zf-C3HC4_3
Pur_ac_phosph_N
zf-RING_2
zf-C3HC4_2
zf-RING_5
Exonuc_VII_L
NDNF
Motif
Other DBs
NCBI-GeneID:
117939382
NCBI-ProteinID:
XP_034720588
LinkDB
All DBs
Position
24:complement(5230325..5281715)
Genome browser
AA seq
687 aa
AA seq
DB search
MDTLESELTCPICLELFEDPLLLPCAHSLCFGCAHRILISHCATNESVQSIGAFQCPTCR
YVISLSPERGLEGLKRNVTLQNIIDRVQRASSSSGVPLPLPAPHSGPNSPGEEGSNRLAL
VPVSAAMSSPGTPPEPVQCQFCEQDPPQDAVKTCVTCEVSYCEECLRATHPNKKPFTGHR
LIEPMPDSHLRGLQCLEHDEEKVNMYCVTDDQLICSLCKLVGRHRDHQVAALSDRYEKLK
QALDSNLSNLIKRNNELESLMGKLIQTCQHVEVNASRQEGKLLEECDILIDIIQQRRQII
GNKIKEGKAQRIRKLAQQISNCKQCIERSSALITQADQTLKETDPARFLQTAKCINERVS
MATASTQVLIPEIHLADTFDTVALDFTREKKLLENLDYLTAPSAPSMREELCTASYDTIS
VHWTSDDEFTVVSYELQYAIFTGQSNIASLCNSLESWMIVPNIKQNHYTVHGLQSGTKYI
FVVKAINQAGSRSSEPGTLKTNSQPFKLDPKSAHKKLKVSHDNLTVERDETTSKKGHSQE
RFCSQNSYGVVGNVYIDSGRHYWEALIGGSTWYAVGIAYKSAPKHEWIGKNSASWVLCRC
NNSWVVRHNSKELAIEPSPHLRRVGVLLDYDAGSVTFYDAVGSQHLHTFHVSFVQPVCPV
FNVWNKCLTILTGLPIPDHLEGLETDN
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggacactctggagtcagagctgacctgcccaatttgcctggagctctttgaagacccg
ctgctgctcccctgcgctcacagcctgtgcttcggctgcgcccatcgcatcctcatctcc
cactgtgccactaacgaatctgttcagagcatcggcgccttccagtgccccacctgtaga
tatgtcatttccctgagtccggagcgtggactcgaaggacttaagagaaacgtgaccttg
cagaacattattgatagagttcagcgggcctcatcatcatctggggtccctctaccgctg
cctgcaccccacagcggacccaactctcccggcgaggaagggagcaaccggttggctctg
gtcccagtcagcgctgccatgtccagcccaggcacgcctcctgaaccggtccaatgtcag
ttctgtgagcaggacccgccacaggatgcggtgaagacgtgtgtgacgtgcgaggtgtcg
tactgcgaggagtgcctccgagccacgcacccaaacaagaagccgttcaccggccaccgg
ctcatcgagcccatgccagactcccacctcagggggctccagtgtctggagcacgacgag
gagaaggtgaacatgtactgtgtcactgatgatcagctgatctgctcactgtgcaaactg
gtcggaaggcacagagaccaccaggtggcagcactgagcgaccgctatgaaaaactcaag
caagccctggactccaacctgagtaatttgatcaagaggaacaacgagctggagtctctt
atggggaaactgatccagacttgtcaacatgtagaggtgaatgcgtcccgtcaagagggc
aagctcctggaggagtgtgatatcctgattgacattattcagcagaggcggcagatcatc
ggcaacaagatcaaggaggggaaggcacaaaggattcgaaagcttgcccaacagatctcc
aactgcaagcagtgcatcgagaggtcctccgccctcatcacgcaagctgatcagacactg
aaggaaaccgatcccgctcgcttcttgcagactgccaaatgcatcaacgagagggtttcc
atggcaactgcatcaactcaagtgctgatccctgagatacacctagcggacacctttgac
actgttgcccttgacttcaccagagagaagaagttgctggagaatctggattaccttact
gctccgagtgctccgtccatgagggaagagttgtgcacggcttcctacgacaccatctct
gtccactggacgtctgatgatgagttcacagtggtttcctatgagctacagtatgccatc
ttcactggacagtcaaacattgccagtctgtgtaactcattggagagctggatgattgta
cccaacatcaagcagaaccactacacggtgcacggtctgcagagcggcaccaagtatatt
tttgttgtcaaggccattaaccaagcgggaagcaggagcagcgaaccggggactctgaag
accaacagccagccgttcaagctggatccgaaatctgctcacaagaagctcaaggtgtcc
cacgacaacctgacagtggagcgggacgaaaccacgtccaagaaaggccacagccaggag
cgtttctgcagccagaacagttatggcgtggtggggaatgtctacatcgacagtggccgt
cactactgggaggctttaattggagggagcacatggtacgctgtgggcatagcctacaaa
tctgcccccaagcacgagtggatcggaaagaactctgcctcctgggtgctctgccgctgc
aacaactcctgggtggttcgccacaacagcaaagagctggccatcgagccctcgccccac
ctgcgacgcgtcggagtcctgttagactacgacgccggttctgtgaccttctacgacgcc
gtgggctcgcagcacctgcacacattccacgtgtccttcgtccagcccgtgtgtcccgtg
ttcaacgtgtggaataagtgtttgacgattctcaccggtctacccatccctgatcaccta
gagggactggagactgacaactga
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