Etheostoma cragini (Arkansas darter): 117940542
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Entry
117940542 CDS
T07493
Symbol
prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04120
Ubiquitin mediated proteolysis
ecra04137
Mitophagy - animal
ecra04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117940542 (prkn)
04120 Ubiquitin mediated proteolysis
117940542 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
117940542 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecra04131
]
117940542 (prkn)
04121 Ubiquitin system [BR:
ecra04121
]
117940542 (prkn)
03029 Mitochondrial biogenesis [BR:
ecra03029
]
117940542 (prkn)
Enzymes [BR:
ecra01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
117940542 (prkn)
Membrane trafficking [BR:
ecra04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
117940542 (prkn)
Aggrephagy
Other aggrephagy associated proteins
117940542 (prkn)
Xenophagy
Other xenophagy associated proteins
117940542 (prkn)
Ubiquitin system [BR:
ecra04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
117940542 (prkn)
Mitochondrial biogenesis [BR:
ecra03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
117940542 (prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_12
ubiquitin
Rad60-SLD
Motif
Other DBs
NCBI-GeneID:
117940542
NCBI-ProteinID:
XP_034721680
LinkDB
All DBs
Position
Unknown
AA seq
305 aa
AA seq
DB search
MLDVSLFIFCLDAGRYSCGAGEGSNSTLFVFVVFVRYRCGPAVPVQLLPDASVLDLKELV
GGQQGVPAQRLRVLFAGRELRDTHTLQGCDLTEQSTVHVVLPSSGSSSSPWGGEGPDRGL
TRLDLSFSRLLSSSSLADILQDREEGGDRGGDRGGDQGGYEGGVQGGVQGGVQGGVQGGV
QRGDKGRDQGGDHGGVQGGDQGGDQVKGVRPRSTFFVYCKRCSSVQPGKLRVCCRSCRHT
TLVLSRGPSCWDDVLLRGRISGVCQSDGCQGNEAVRGRSVNMGDRLLFDLKSHPPEEDYR
VLEHC
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgctggacgtgtccctcttcatcttctgtctcgatgctggacgttattcgtgcggtgcc
ggtgagggcagtaacagtactctgtttgtattcgtagtattcgtgcggtaccggtgcggg
ccggcggtgccggtgcagctgctccctgacgccagcgtcttggacctaaaggagctggtg
ggggggcagcagggggtcccagcccagagactcagggtcctgttcgctgggagggagctc
agagacacacacaccctacagggctgtgacctcacagaacagagcaccgtccatgttgtc
ctcccttcatcaggctcctcctcctcgccatgggggggggaggggcctgatagaggtctg
acccggctggatctctccttctcacgcctcctctcctcctccagcctcgcagacatcctg
caggacagggaggagggaggagaccggggaggagaccggggaggagaccagggaggatac
gagggaggagtccagggaggagtccagggaggagtccagggaggagtccagggaggagtc
cagcgaggagacaagggaagagaccagggaggagaccatggaggagtccagggaggagac
cagggaggagaccaggtgaaaggcgtgcgtccccgcagtactttctttgtgtactgtaag
cgctgcagctcggtccagccggggaaactccgagtttgttgtagaagctgcagacacaca
acactggtactcagcaggggtccgtcctgttgggatgatgtcctcctccgaggtcggata
agcggcgtatgtcaatcagatggttgtcaaggcaacgaggcggtaagagggcggagcgtc
aatatgggcgacagacttctctttgatctcaaatcacaccctcctgaggaggactacaga
gttctggaacactgttga
DBGET
integrated database retrieval system
