Etheostoma cragini (Arkansas darter): 117941689
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Entry
117941689 CDS
T07493
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117941689 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecra03041
]
117941689 (prpf8)
Spliceosome [BR:
ecra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117941689 (prpf8)
Complex C
U5 SnRNP specific factors
117941689 (prpf8)
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
117941689
NCBI-ProteinID:
XP_034722583
LinkDB
All DBs
Position
3:14403356..14420666
Genome browser
AA seq
2338 aa
AA seq
DB search
MAATFPYRGVPVGMPPGVPPPVPVPDYMSEEKLQEKARKWQHLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDSEEDSSVAEWLYEHQPLKDSAKFVNGTTYRRWQFTLPMMST
LYRLANQLLTDLVDFNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPDDDEEFELPEYVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGR
TRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETAEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDT
PTESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYA
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcagctaccttcccgtacagaggtgtccctgtagggatgccaccaggtgtaccccct
cctgtgcccgtcccggactacatgtctgaggaaaaactgcaagagaaagcaagaaaatgg
cagcacttacaggcaaaacgctactcagaaaagagaaagtttggctttgtggatgctcag
aaggaagacatgccacctgagcatgtacgcaagatcatcagggaccatggagacatgacc
aatagaaagtttcgccatgacaagagggtgtaccttggtgccctcaagtacatgccccat
gcagtactgaagctgcttgaaaacatgcctatgccctgggaacagatcagagacgtgccc
gtcctctaccacatcaccggagctatttcctttgtgaatgaaatcccctgggtcatagag
ccggtctacatcgctcagtggggcaccatgtggatcatgatgcggcgtgagaagcgtgat
cgtcgtcacttcaagcggatgcgttttccaccatttgatgatgaggagccgccactggac
tacgctgacaacatcctcgatgtggaaccactggaggccatccagatggagctggactct
gaggaggactcttcagttgcggagtggttatatgagcaccaacccctcaaagactctgcc
aagtttgtgaatggaaccacctaccgtcgctggcagttcacactgcccatgatgtccacg
ctgtaccgcttggccaatcagctgctcacggacttggtggatttcaattacttttatctg
tttgacctcaaggccttctttacgtccaaggccttgaatatggccatacctggaggacca
aagtttgagccactggtcagggacatcaacctccaggatgaagactggaatgagttcaat
gacatcaacaagatcatcatccgacagcctatcaggacagagtacaaaatcgccttcccc
tacctgtacaacaacttgccgcaccacgtccaccttacctggtatcatacacccaacgtg
gtatttatcaagacagaagatccagatctcccagcgttctactttgacccgctgatcaac
ccaatttcacacagacattctgtcaagagtcaggagcctctgcctgatgacgatgaggag
tttgagcttcctgaatatgtcgagcccttcctcaaggacaccccactctacaccgacaac
acagctaatggcattgctctgctgtgggcacccagacccttcaacctcagatctggccgc
acaaggcgtgccattgatatccccctgatcaagaactggtaccgtgagcactgccctgca
ggacagccagtgaaagtgcgtgtgtcataccagaaactgcttaagtactatgtgctcaat
gctctcaaacacagaccacccaaggcccagaagaagaggtatctgttccgctccttcaag
gccaccaagttctttcagtccaccaagctggactgggttgaggtgggtctgcaggtttgc
cgacagggctacaacatgcttaatctgcttatccaccgtaagaacctcaactacctgcat
cttgactacaacttcaacctgaagcctgtcaagacactgactacaaaggaaagaaagaag
tcccgattcggtaatgcctttcacttgtgcagagaggtgctgcgtctcagtaagctggtg
gtggacagccacgtgcagtacagactgggaaatgttgatgccttccagttgtctgatggg
ctgcagtacatcttcgcccatgtgggccagctgacaggcatgtaccgctacaagtacaag
ttgatgagacaaatccggatgtgcaaagatctgaagcatctcatctactaccggttcaat
actggtcctgtgggcaagggtccaggatgtggcttctgggctcccggctggagagtgtgg
ctgttcttcatgagggggatcactcctctgttggagaggtggctggggaatctgctggcc
aggcagtttgaaggacgtcactccaagggcgtagccaagacagtgaccaaacagcgtgtg
gagtcccactttgacctggagctgcgtgctgctgtgatgcatgacatcttggacatgatg
cctgagggcatcaaacagaacaaggccagaaccattctgcagcacctcagtgagtcctgg
aggtgctggaaggccaacatcccctggaaggtgccaggcctgcccactcccattgagaac
atgatcctgcgctacgtgaaggctaaagctgactggtggaccaacaccgcccactacaac
cgtgaacgaatccgccgcggagccactgtggacaagactgtgtgcaagaagaacctgggg
agactgacccgtctgtacctgaaagctgagcaggagagacagcacaactacctgaaggat
ggaccctacatcacagctgaagaggcggtagccatctacaccaccactgttcactggctg
gagagtcggcgcttctcgcccatccctttccctccgctgtcctacaaacatgacaccaag
ctgctcatcctggccttggagaggctcaaggaggcgtacagtgtgaagtcgcgtctgaac
cagagtcagagggaggagctggggctgattgagcaggcctacgacaatcctcacgaggcc
ttgtccaggatcaaacgtcacctgctcacccagagagcctttaaagaggtgggtattgag
ttcatggacctgtacagtcatctggtgcccgtgtatgatgtagagcccctggagaagatc
acggacgcctaccttgaccagtacctgtggtacgaggcggacaagagacgtctcttccca
ccctggatcaaacctgctgacactgaaccaccacccctgctggtctacaagtggtgccaa
ggcatcaacaacttgcaggacgtgtgggagacggcggaaggagagtgcaacgttatgctc
gagtcccgctacgagaagatgtatgagaagattgatctgaccctgctcaacaggcttctg
cgtctgattgtggaccacaacatcgctgattacatgacggccaagaacaacgttgtcatc
aactacaaggatatgaaccacaccaactcctacggcatcatcagggggctccagtttgcc
tcattcattgtacagtactacggtctggtgatggacctgctggtgctgggcctgcaccgt
gccagtgagatggccggcccccctcagatgcccaatgacttcctcagtttccaagacaca
cccacggagagcgcccacccaattcggctttactgccgctacattgatcgcatccacatc
tttttcaggttctccgctgacgaggccagagatctgattcagaggtacctgacggagcac
ccagaccccaacaacgaaaacatagtgggctataacaacaagaagtgttggccacgtgat
gcccgcatgagactgatgaagcacgatgtcaaccttggacgtgctgtgttctgggacatc
aagaaccgcttgccccgatcggtgaccactgtccagtgggagaacagctttgtttcggtc
tacagcaaagacaaccccaacctgctcttcaacatgtgtggctttgagtgccgcatcttg
ccaaagtgccgcaccagctatgaggagtttacccacaaagatggtgtgtggaacctgcag
aacgaggtaaccaaagagaggacagcccagtgtttcttgcgtgtggatgatgaatcaatg
cagcgcttccacaacagagtgcgccagatcctgatggcctctggatccaccacattcacc
aagattgtgaacaaatggaacacggctttgatcggtttaatgacatacttccgtgaggct
gtggtcaacacccaggagctcctggacctgctggtgaaatgtgagaacaagatccagacc
cgtattaagatcggcctgaactccaaaatgcctagccgtttccctcctgtagtcttctac
actcccaaagagttgggcggccttggcatgctgtctatgggccacgtgctcattccccag
tcagacctgcggtggtccaagcagacagatgtgggcatcacccacttcaggtctggaatg
agccatgaagaagaccagctgattcctaacctgtatcgttacattcagccgtgggagagt
gagttcattgactcccagagggtttgggctgagtatgccctcaaaagacaggaggccatt
gcccagaacaggcgtctgaccctggaagatttggaggactcgtgggacagaggaattcct
cgtatcaacacacttttccagaaggacagacacacactggcttatgacaaaggctggaga
gtcaggacagatttcaaacagtaccaggtgctgaagcagaatccattctggtggacccac
cagaggcacgatggcaaactgtggaacttgaacaactaccgcacagacatgatccaggct
ctgggaggtgtggagggcatcctggaacacacactctttaaaggcacttactttcccacc
tgggagggtctcttctgggaaaaggcgagtggctttgaggagtccatgaaatggaaaaag
ctgaccaacgcccagaggtctggtctgaaccaaatccccaaccgtcgcttcacactttgg
tggtctcccaccatcaacagagccaacgtgtacgtgggcttccaggtacaactcgacctg
acgggaatctttatgcatggcaagatccccacgctgaagatctccctcattcagatcttt
agggctcacttgtggcagaagattcatgagagcattgtcatggatctctgtcaggtgttt
gatcaggagctggatgctcttgagattgagacggtgcagaaggagaccattcatcccagg
aagtcatacaagatgaattcctcttgtgcagacatcctcctctttgcatcatacaagtgg
aacgtctctcgaccgtctctgcttgcagactccaaggacgtgatggacagcaccaccaca
cagaagtactggatcgacattcagctacgctggggtgactatgactcgcatgacatcgag
cgctacgccagggccaagttcctggactacaccaccgacaacatgagtatctacccctcc
cccacgggggtgctcatcgctatcgacctggcttacaacctccacagtgcctatggtaac
tggttccctggaagcaagcctctgatccagcaggccatggccaagatcatgaaggccaac
cctgccctgtacgtgctcagggagcgcatccgcaaaggtctgcagctgtactcgtctgag
cccactgagccctacctgtcctcacagaactatggagaactcttctccaaccagatcatc
tggtttgtagatgacaccaacgtctaccgtgtcaccatccacaagacctttgaaggtaac
ttgaccacaaagcccatcaatggagctattttcatcttcaaccccaggactggtcagctc
ttcctaaagatcattcacacatctgtgtgggctggacagaaacgtctgggacagctggcc
aaatggaagacagctgaagaagtggctgccctgattcgctccctccctgtggaggagcag
ccgaaacagatcattgtaaccaggaagggcatgctggaccctctggaggtccacttgctt
gacttccccaacatcgtgatcaaagggtctgagttgcagctgcccttccaggcctgtctg
aaggtggagaagtttggagacctgatcctgaaggctacagagcctcagatggtgctgttc
aacctctacgacgactggctcaagaccatctcgtcttacacagccttctcccgtctcatc
ctgatcctcagagcactgcacgtcaacaatgaccgggccaaggtgatcctgaaacctgat
aagaccactatcaccgagccccatcacatctggcccacgctcactgacgaagagtggatc
aaggtggaagtgcaactcaaagatctcattctggcagattacgggaaaaagaacaatgtg
aatgtggcctcactgacccagtctgagatccgtgacatcatcctgggtatggagatctcc
gctccgtcacagcagcgtcagcagattgcggagattgagaagcagactaaagagcagtcg
cagctcacagccacgcagacccgaacggtcaacaagcacggcgacgagatcatcacgtcc
accacctccaactatgagacccagaccttctcctctaagacagagtggagagtcagggcc
atatctgctgccaacctccacctccgaaccaaccacatctacgtgtcatctgatgacatc
aaggagacgggctacacctacatcctgcccaagaatgtcctcaaaaagtttatctgcatc
tcagatctgcgagcacagattgcaggctacctgtatggcaccagtccaccagacaacccc
caggtgaaggagatccgttgtatcgtcatggtaccacagtggggtacacaccagactgtc
cacctgcccaaccagctgcccggtcatgaataccttaaagaaatggagcccctcggctgg
atccatacccagcctaatgagtcgccccagctgtccccacaggacgtcaccacccatgca
aaggtcatggcagacaacccttcttgggacggagagaagaccatcatcatcacttgcagc
ttcaccccaggctcgtgcacgcttacagcctacaagctgacacccagtggctatgagtgg
ggtcggcagaacacagacaagggcaacaaccctaaaggctacctgccatcccactatgaa
agagtgcagatgctgctctctgatcgcttcctgggcttcttcatggtgcctggccaggtg
tcctggaactacaacttcatgggtgttcgtcatgaccccaacatgaagtacgacctgcag
ctggccaaccccaaggagttctaccatgaagtccatcggccctcacacttcctaaacttt
gcctcactgcaggagggtgagatctataatgcagaccgtgaggacatgtatgcctga
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integrated database retrieval system
