Etheostoma cragini (Arkansas darter): 117941792
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Entry
117941792 CDS
T07493
Symbol
dhx36
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117941792 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117941792 (dhx36)
03012 Translation factors [BR:
ecra03012
]
117941792 (dhx36)
Enzymes [BR:
ecra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117941792 (dhx36)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117941792 (dhx36)
Translation factors [BR:
ecra03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
117941792 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
HerA_C
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
117941792
NCBI-ProteinID:
XP_034722804
LinkDB
All DBs
Position
3:10470474..10499496
Genome browser
AA seq
1080 aa
AA seq
DB search
MSSGYGGGGGRRGRRGGRGNRDGSRERWDRGGGGGGSRGHSSDFDQDRDGGGRGGQRDRP
PPHLKGREIGLWYARYGAVRRKQADRRSRAVVQMDEAREQHITKLLNSVQNDQPGPWRDA
WDASVSTSDSLRTSASSSGHCYFDGDLSEEEKQKIEFKSEEEEEEVTPGQKKATHKSQRY
FSPAVVKDEPPEAWDDEEQQQQQEEREEEEEKEKLRREDKDLEFLLQEVARDRSLDDCLK
RDLQSKESDPKYREMLKFREKLPSYGKKEELVQLINSNRVLVVSGETGCGKTTQVTQFIL
DDYINRGVGSMCRVVCTQPRRISAISVAERVAAERAESVGNGNSCGYQIRLQSRLPRRQG
SILYCTTGIILQWLRSDPLLSSISHLVLDEIHERNLQSDVLLIIVKNLLNFRDDLKIVLM
SATLNAEKFSKYFDNCQIIHIPGLTFPVKEFLLEDIVEMTRYRSQNRDSRPSWKKGFWQG
RHSRPEKEEKEAEYKESWPSYARTLQDRYSDNTIEALEMLDNDEKIDLELIVALIRHIVL
KEEEGAILIFLPGWAEISSLNDLLTAQKMFQSDRFVIIPLHSLMPTVNQTQVFKKPPPGI
RKIVIATNIAETSITIDDVVYVIDGGKIKETHFDTNNNISTMTSEWVSLANAKQRKGRAG
RVCPGQCYHLYNGLRASLLDAYQLPEIMRTPLEELCLQIKILKLGSIAQFLEKALDPPAE
KAVNLAIKNLIDLNALDRSENLTALGFHLARLPVEPHIGKLILFGALLGCLDPVLTIAAS
LSFKDPFFIPLGKEKMADMRRKTLSKNSKSDHLTIVNAFQGWVEAKQRGARYEREYCWDN
FLSANTLQMLHNMKGQFAEHLMRTGFVSSRDPKDPKSNVNSDNEKLIKAVIVAGLYPKVA
MIRPSNSKKRPGVKVYTQADGKVCIHPKSVNAEETQFNYTWLIYHLKMRTSSIFLYDCTE
VSPFSLLFFGGDITIQKDEDQETIAVDQWIVFRSPARIAHLVKSLKKELDFLLEEKVRNP
APVNWENRQSKDCAVITAIIDLITTQEKPTGSTKGYDRTWTPAPRGQHTHFKDDDDDDDD
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgagttctggatatggcggtggaggagggagaagaggcagaagaggaggtcgagggaac
agagatggaagcagagaaagatgggacagaggaggaggcggaggaggttcaagaggacac
agctccgacttcgaccaggaccgagatggtggagggagaggcggacaacgggaccgtcct
cctccacacctgaagggacgcgagattggtctgtggtacgcaagatacggagccgtgagg
aggaaacaggccgaccgcagatcgcgggcagtggtccagatggatgaggccagagagcag
cacattaccaagctgcttaattctgtccaaaatgatcagcctggtccttggagagacgcc
tgggatgcaagtgtctctacctctgacagcttgcggacatctgccagtagcagtggtcat
tgttactttgacggggatctgtctgaagaggaaaagcagaagattgagttcaaatctgag
gaagaggaggaagaagttactccgggccaaaaaaaagcaactcacaaatcacaacgttac
ttctctccagcagttgttaaagatgagcccccagaggcgtgggatgatgaagagcagcag
cagcagcaggaggagagggaggaggaggaggagaaagagaaactgagaagagaagacaag
gacctggagttcttattgcaggaagtagcgagagacagatcactggatgactgcttaaag
agggatctgcagagcaaggaatcagatccaaagtacagagaaatgctgaaattcagggaa
aaactaccatcctatgggaaaaaagaggagctggtgcaactgatcaactcaaaccgagtc
ctggtggtgagcggggaaacggggtgcggaaaaacaactcaggtcacccagttcatccta
gatgactacatcaatagaggcgtgggctcaatgtgtcgtgtggtctgcacacagccccgt
cgcatcagcgccatctcggtagcagagcgtgtagcagcagagagggcagaaagtgttggg
aatggaaattcttgtggttaccaaattcgcctacagagccggttaccacggagacaaggt
tcgatcctgtactgtacaacgggcattattcttcagtggcttcgctcagacccattgttg
tctagtatcagccacctggtgttggacgagatccacgagagaaacctgcaatcggacgtt
ttgctcatcattgtgaagaacctactcaactttcgagacgacctcaagatcgtcctcatg
agtgctacgctcaacgcagagaagttttctaaatattttgacaactgtcaaataatccac
atccctggcttgacgttcccagtaaaggagttcttgcttgaggacattgtggagatgacc
aggtatcggtcccagaatcgggacagtcgcccctcatggaagaaaggcttttggcaggga
cgccactccagaccggagaaggaggagaaagaggctgaatacaaggagagctggcctagt
tatgcacggacactgcaggacagatactctgataacaccattgaggcactggagatgttg
gacaatgatgagaagattgacctggagttgattgtggcgctgatccgccatattgtgctc
aaggaggaggaaggagcaatcttgatcttcctgcctggctgggccgaaatcagcagtctc
aatgacctgctcactgctcagaagatgttccaatcagaccgcttcgttatcatccctttg
cactccctcatgccaaccgtcaatcagacgcaggtgttcaaaaagcctccacctggaatt
agaaagattgtgattgctaccaatatagctgagaccagcatcaccatagatgacgtggtg
tacgtgatagatggaggcaagattaaggagacccactttgacaccaacaacaacatcagc
actatgacatcagagtgggttagcctggccaatgccaagcagaggaaaggacgtgccggc
agagtgtgtccagggcagtgctatcatctgtacaatggtctcagggccagcctgctggat
gcctatcaattacccgaaatcatgaggacaccgctggaggagctctgcctgcagatcaag
atattgaagcttgggtctatagctcaattcctggagaaagccctggaccctccagctgag
aaggccgtcaacctagccatcaagaacctcatagacctgaatgccctggaccgttccgag
aatctgacagcgctgggtttccacctggctcgtctgcctgtggagcctcacattggcaag
ctcatcctgtttggagctctgctgggctgcctcgaccccgtactcaccatcgctgcttca
ctcagcttcaaagaccctttcttcatccccctgggtaaagagaagatggcagacatgagg
agaaaaaccctgtccaaaaactccaagagtgaccacctcaccattgtcaacgccttccag
ggctgggtggaagcaaaacagcgtggcgccaggtatgagagggagtactgctgggacaac
ttcctgtctgccaatacactccagatgctgcacaacatgaagggtcagtttgctgagcat
ctaatgcgtacaggttttgtcagcagcagggaccccaaagaccctaaatctaatgtcaac
tcagacaacgagaagttaatcaaggcagtcattgtagctggtctataccccaaggtggcc
atgataagaccatctaacagcaaaaagagaccaggggttaaggtgtacacccaggctgat
ggaaaggtgtgcatccaccctaaatcagtcaatgctgaggagactcagttcaactacacg
tggctcatctaccacctcaagatgagaacgagcagtatcttcctgtacgattgcactgag
gtgtccccgttctcactgctgttcttcggaggagacatcacaatccagaaagatgaggac
caggagacgatcgccgtggaccagtggattgtcttcagatccccggcacgcatcgctcac
cttgtcaagagtttaaagaaagagctggatttcctgctggaggaaaaagttcgtaaccct
gctcctgtaaactgggaaaaccgtcagtccaaagactgtgctgtcatcacagccatcata
gacctcatcaccacccaggagaagcctacaggcagcactaaaggctatgacaggacgtgg
acgcccgcccctagaggacaacacacacacttcaaggacgacgatgatgacgacgatgat
taa
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